Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01658 ATGGGAGAAGAGTCATTGACAATATCAACATCAGTGCCCTTTGACAGAGCAGTTGATCAGGCAATTGTATCTATAAAGAAAGGTGCATACTTACTGAAGTGTGGACGCAGAGGGAAGCCGAAGCTCTGCCCATTCAGACTTTCTCAGGATGAGAAAAATTTGATTTGGTACTCTGGACAGCAGGAAAAACACTTGCGGATAAGTTCGGTCACAAAAATTATTCAAGGACAGGGAAATATAAAGTCCCAAAAGCTGAATCAAAATGGGAAGGAGTGCCATTCATTTTCTCTAATTTATGATAATGGTGAACACTCACTTGATCTGATATGCAAGGACAAAGCACAGGCTACTTCATGGTTTTTGGGGTTGAAAGCTGTAATTTCTCAGTCCCCACACCAAAAACCTTTTATTGGTTTAAGAAGCTTCAAAGGTATACATAGCTGTGTCAGTAGTCCAGCTGGAATCTTACGAAGAAAGAAAAACCTTGGCCTTCTGGAGGATACTGCTGAGTTTACAAAGGTACACAGCGTATGTGCTAGTCCTACTTTGTCACTTTCAGAGAGGTGCTTTTCTGATGGCTTATCATATACTTGTGATAGCTTTTACTCATCAGAATCTTTCCCCTCTGACACTCAAAGGGCAGTCGATAATTCAGTTCCAAATTCTCCCTGTATCGATCCACATATTCTTAGCAAGAGCAAATCAACATATGTTGATACAGAATATGAGAAGGATTTGGCCTATAGGTATCTTGTTCCCGCTAGCTCTCCACGTGTAGCAAATAGCAACATATTGAAAGATGTCATGATCTGGGGCGGTGGTATTGTCGGGATTGCTGTGAGTGGGGATGATCAGCTTGTTGACCAACAAGGAGCTCATGTGCTATTGCCAAAGTTACTAGAATCCACAATGATGTTAGATGTAGAAAACATAGCATTAGGAGAAAAACATGCTTCACTTGTTACAAAACAAGGTGAAGTGTTAAGCTGGGGTGAGGGGAAAGGAGGAAGGTTGGGGTTCAAAATTGATATAGATATAACCGCACCCAAAATTGTTGATTCTCTTAATGGGGTCCACGTAAAGGATGTTGCATGTGGTGAGTATCATACATGTTCTTTAACGAATGCTGGTGAAGTATATGCTTGGGGGAATGATGGTTGTTGTGTTGGAGATCAGTTTGGAGAAGGGAGATTCAAAACTCAATGGATACCACACAAACTCTCTGGCCCTTTAGATGGTATTATTATATCACATGTCACTTGTGGGGAGTGGCATACGGCAATTGTCTCATCGTGTGGACGACTATTTACATATGGGGATGGTACATTTGGAGCTCTTGGTCATGGGAATTCAGAGAGCATTTCTCAACCAAAAGAAGTTGAATCTCTTAAGGGTCTTTGGGTGAGGTCCGTTGCCTGTGGATCATGGCACACGGCAGCAATTGTTGAAGTCATGGTTGACCGGTTTAAGTATAATACCGGTAAGCTGTTCACTTGGGGTGATGGAGAGAAAGGGATGCTTGGCCATGTTGATAACGCGAGGAAGCTCTTGCCAACTTGTGTTTCACAACTTCTGGATTATGATTTTGTTCAAGTATCCTGTGGAAGAATGTTGACTATAGCACTTTCCAATATGGGTAAAGTCTTCACAATGGGAAGTGCAGTGCATGGACAGTTAGGAAATCCGCGTGCCAAGGATAAATCGGTTACAATTGTTGAAGGACTGCTTAAACAGGAGTTTGTGAAAGAGATATCATCAGGCTCTTATCATGTTGCTGTCTTGACATCTTCCAGGAGTGTCTATACATGGGGAAAGGGTGCAAATGGACAGCTAGGATTAGGTGACACCGAAGATCGATACTCACCATCTTTTGTTTCAGCTCTAAGAGACTGGCAGGTTGAGAGTATTGCTTGTGGACTGAGCTGCACGGCTGCTATCTGTTTACACAAACCAATTTCCATTAGTGACCAATCAGGTTGCAGTGGTTGTAAGTTGCCTTTTGGATTTACAAGGAAGAAGCATAATTGCTATAATTGTGGTCTTTTATTTTGTCATCCATGTAGTGGTAAGAAGGTTACTAATGCAGCTCTGGCCCCAAATAAGGACAAGGCTTTTCGGGTTTGTGACCAATGCTTCAATAATAAACAGCTTGGAAGTACGCCTTCAGTTGTGGCTTCTAGGTCCAGAAATTATAACTCTCAGAAGCTGCTGAAGAATCAGAACAAGTTTACTGATTTTACTGAAGATAGAGGAGAAGCAACAGTGACACAGGGTCCACTGTTGTCTCTTGGTCAATCATGCTACAAACGAAGCATGCCGGGTGGAAGAAAGGAGTGGAAAAACCAACAAGAAAGCCAGCTTAATTTAGAAAATATTTCTTCTGTATATGGTGGAGTGCCGAAATGGGGGCAAGTTTCATGCCCTGCCCTGTTTGAAAATTGTACAGAAACTTCTGTTTCATCATTTAGAAATAAAAAATTAGGTTCTCTTACTTCAGTGAATTCAGAGTCTACTTTATCCAACAATTTGTACGGAGAGAAAGATACCACAAAGTCTGATAATACACTGACAGAAGAAGTTCAGAGGCTGAGAGCTGAGGCTAGAATCCTTGAAGAGCAATGTGAGATAGGAAACCGTAAGTTACAAGAATGTCATAAAAAGATTGAGGAGACTTGGCTCTTGGCAAAGGAGGAGGCTGCAAAGAGCAAGGCAGCAAAAGAGGTCATAAAAGCATTGGTGTTAAGGTTTTTGCAGCTGCAAACGGTATCAGATAAAACCGTAGCTGGACAAGAAGGAAAGCTTGGGATACAGGAATGTCTGTCAAATTTAACACCCATTCGTACAGATGTCAACTCTCCGAAGTATGGCAATGTGGACAGTCTATCAAATTCCCCTATAGTGTTCTCTGACTCATTAAAATCAAAACTTGCGAGAAGCTCAATCCTTAAAAGTGATAGATCAATAGAAGATTCTCAGTTAAATAAAGCAGAATCTCATGAAGATAGCTCTGAAGGCTTGAAGGTTGAATGGGTAGAACAGTATGAGCCTGGTGTCTACATCACTTTAACTTCCTTGCCATGTGGGCAGAAGGGCCTTAAGAGAGTTAGATTCAGCCGGAAACAATTTTCTGAGAAGGAAGCGGAGCGATGGTGGGAGAAAAATCAAGTGACAGTGTATCAGAAGTATGGGATTGAAGGATATGTAAAGACAAGCGAAAACTGGGAGAAGGGCTAA 3234 0.4168 MGEESLTISTSVPFDRAVDQAIVSIKKGAYLLKCGRRGKPKLCPFRLSQDEKNLIWYSGQQEKHLRISSVTKIIQGQGNIKSQKLNQNGKECHSFSLIYDNGEHSLDLICKDKAQATSWFLGLKAVISQSPHQKPFIGLRSFKGIHSCVSSPAGILRRKKNLGLLEDTAEFTKVHSVCASPTLSLSERCFSDGLSYTCDSFYSSESFPSDTQRAVDNSVPNSPCIDPHILSKSKSTYVDTEYEKDLAYRYLVPASSPRVANSNILKDVMIWGGGIVGIAVSGDDQLVDQQGAHVLLPKLLESTMMLDVENIALGEKHASLVTKQGEVLSWGEGKGGRLGFKIDIDITAPKIVDSLNGVHVKDVACGEYHTCSLTNAGEVYAWGNDGCCVGDQFGEGRFKTQWIPHKLSGPLDGIIISHVTCGEWHTAIVSSCGRLFTYGDGTFGALGHGNSESISQPKEVESLKGLWVRSVACGSWHTAAIVEVMVDRFKYNTGKLFTWGDGEKGMLGHVDNARKLLPTCVSQLLDYDFVQVSCGRMLTIALSNMGKVFTMGSAVHGQLGNPRAKDKSVTIVEGLLKQEFVKEISSGSYHVAVLTSSRSVYTWGKGANGQLGLGDTEDRYSPSFVSALRDWQVESIACGLSCTAAICLHKPISISDQSGCSGCKLPFGFTRKKHNCYNCGLLFCHPCSGKKVTNAALAPNKDKAFRVCDQCFNNKQLGSTPSVVASRSRNYNSQKLLKNQNKFTDFTEDRGEATVTQGPLLSLGQSCYKRSMPGGRKEWKNQQESQLNLENISSVYGGVPKWGQVSCPALFENCTETSVSSFRNKKLGSLTSVNSESTLSNNLYGEKDTTKSDNTLTEEVQRLRAEARILEEQCEIGNRKLQECHKKIEETWLLAKEEAAKSKAAKEVIKALVLRFLQLQTVSDKTVAGQEGKLGIQECLSNLTPIRTDVNSPKYGNVDSLSNSPIVFSDSLKSKLARSSILKSDRSIEDSQLNKAESHEDSSEGLKVEWVEQYEPGVYITLTSLPCGQKGLKRVRFSRKQFSEKEAERWWEKNQVTVYQKYGIEGYVKTSENWEKG 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01658 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 325 376 IPR000408 -
Accr3g01658 1077 SUPERFAMILY FYVE/PHD zinc finger 655 714 IPR011011 -
Accr3g01658 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 433 484 IPR000408 -
Accr3g01658 1077 CDD PH_PLC_plant-like 16 128 - -
Accr3g01658 1077 SUPERFAMILY PH domain-like 17 127 - -
Accr3g01658 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 377 432 IPR000408 -
Accr3g01658 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 598 649 IPR000408 -
Accr3g01658 1077 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 471 481 IPR000408 -
Accr3g01658 1077 Pfam FYVE zinc finger 656 714 IPR000306 GO:0046872
Accr3g01658 1077 SMART fyve_4 648 717 IPR000306 GO:0046872
Accr3g01658 1077 Pfam Transcription factor regulating root and shoot growth via Pin3 1008 1062 IPR013591 -
Accr3g01658 1077 Coils Coil 853 880 - -
Accr3g01658 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 546 597 IPR000408 -
Accr3g01658 1077 Gene3D - 389 488 IPR009091 -
Accr3g01658 1077 Gene3D - 254 388 IPR009091 -
Accr3g01658 1077 ProSiteProfiles BRX domain profile. 1008 1063 IPR013591 -
Accr3g01658 1077 Gene3D - 17 134 IPR011993 -
Accr3g01658 1077 SUPERFAMILY RCC1/BLIP-II 267 650 IPR009091 -
Accr3g01658 1077 Gene3D - 489 655 IPR009091 -
Accr3g01658 1077 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 656 722 IPR013083 -
Accr3g01658 1077 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 654 716 IPR017455 -
Accr3g01658 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 600 646 IPR000408 -
Accr3g01658 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 546 594 IPR000408 -
Accr3g01658 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 433 481 IPR000408 -
Accr3g01658 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 494 542 IPR000408 -
Accr3g01658 1077 PRINTS Chromosome condensation regulator RCC1 signature 435 449 IPR000408 -
Accr3g01658 1077 PRINTS Chromosome condensation regulator RCC1 signature 377 393 IPR000408 -
Accr3g01658 1077 PRINTS Chromosome condensation regulator RCC1 signature 267 283 IPR000408 -
Accr3g01658 1077 PRINTS Chromosome condensation regulator RCC1 signature 535 553 IPR000408 -
Accr3g01658 1077 PRINTS Chromosome condensation regulator RCC1 signature 593 614 IPR000408 -
Accr3g01658 1077 PRINTS Chromosome condensation regulator RCC1 signature 419 435 IPR000408 -
Accr3g01658 1077 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 62 917 - -
Accr3g01658 1077 Pfam Regulator of chromosome condensation (RCC1) repeat 360 387 - -
Accr3g01658 1077 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 494 545 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01658 Accr-Chr3 20547219 20554675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01658 1009 1069 Major Intrinsic Protein MIP AT1G31880 44.262 5.81e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01658 - - adu:107481014 1498.41