Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01627 ATGGTTTTGTCAGGGACGCTATGGAAAGTTTTCAGACGTGCCCACAAAGGGAAAGCCCTTCCCGGCGGCGAACTCGACTTGGAACCTGTGATTCCGACCCACTTCCGGTGCCCTGTAAGCCTTGAACTGATGAAAGATCCGGTGACTCTGTGTACTGGAATCACCTACGACAGGGACAGCATCGAGAGGTGGATTGAATCTGGGAACAACACTTGCCCAGTGACCAAGCAAGTTCTTTCGACCACTAACATGATCCCAAATCACGCCATTCGGAGAATGATCCAAGACTGGTGCGTGGAAAATCAGTCTCACGGGATCGAAAGAATCCCAACTCCGAGGATCCCCGTCGCGTCGTACGAGGTTTCCGAGACTTGTTCGAGGATAGTCGCCGCAACACGTAATGGGGATGTGAAAAAGTGTCAAGAATTGGTGGGGAAGATTAAGAATTGGGGTAAAGAGAGCGAGAGGAACAAGAGGTGTATAGTGGAAAATGGTGCTTGTGCAGTGTTAGCCTCTGCCTTTGATTCTTTCTCACATGGGAACATCGAGGAAAACGAGGTTGTTCTAGAGGAGATCTTGGGGGTACTCCCATGGATGATGAACAATCCATCCCAAGATGCAAGATCGAAATTGAGGTCTGAGACATGTTTGAATTGCTTGGTTTGGTTTCTGAGTGGGAACGACCTTTCAGCAAGGCAAAATGCGGCCATGGTGCTCAAGGAAATGCCTGTGAGAGCTATTGCTAAAACTGAAGGTGTAATTGAAGCTTTGGTGAAGATGATTAGAGAGCCTATAGGACCTAATGCAACCAAAGCAAGCTTGACCAAGATTTTCCAGTTGGTTTCCTCATCAGATGATGACAAAGAGAGAATCTCACAGAGATTTGTGGAACTGGGTTTGGTTTCTTTGTTGCTGGAGGCCATTGTTGATGCAGACAAAAGCATATGTGAGAAGGCTTTGGGTGTGTTGGATTGCATCTGTGATTGTAAAGAAGGAAAGGAAGTGGCCATGGCTAATGCTCTGACCCTGCCTCTTGCAACTAAGAAGATCCTAAGGGTGTCACCGTTGGCCACTGAGTTTTCGGTGTCCATTCTCTGGAAGCTCTGTGACAAGGAAGATGAAGAGGTTCTAGTTGAAACAGCTCAACTTGGAGCTTTTCAGAAGCTCCTAGTTGTGTTGCAGGTGGGTTGTGAAGAAAGCTTGAAGGAGAAGGTCACTGAATTGTTGAAACTGTTGAATGCTTATAGAAGCAGAGCGGAATGTGTCGATTCATCCATGGATTTCAAGTACCTTAAGAAGCCCTTCTAA 1308 0.4687 MVLSGTLWKVFRRAHKGKALPGGELDLEPVIPTHFRCPVSLELMKDPVTLCTGITYDRDSIERWIESGNNTCPVTKQVLSTTNMIPNHAIRRMIQDWCVENQSHGIERIPTPRIPVASYEVSETCSRIVAATRNGDVKKCQELVGKIKNWGKESERNKRCIVENGACAVLASAFDSFSHGNIEENEVVLEEILGVLPWMMNNPSQDARSKLRSETCLNCLVWFLSGNDLSARQNAAMVLKEMPVRAIAKTEGVIEALVKMIREPIGPNATKASLTKIFQLVSSSDDDKERISQRFVELGLVSLLLEAIVDADKSICEKALGVLDCICDCKEGKEVAMANALTLPLATKKILRVSPLATEFSVSILWKLCDKEDEEVLVETAQLGAFQKLLVVLQVGCEESLKEKVTELLKLLNAYRSRAECVDSSMDFKYLKKPF 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01627 435 CDD RING-Ubox_PUB 32 84 IPR045210 -
Accr3g01627 435 FunFam RING-type E3 ubiquitin transferase 25 107 - -
Accr3g01627 435 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Accr3g01627 435 SUPERFAMILY RING/U-box 28 107 - -
Accr3g01627 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 104 IPR013083 -
Accr3g01627 435 PANTHER WDSAM1 PROTEIN 28 422 IPR045185 GO:0061630
Accr3g01627 435 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Accr3g01627 435 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Accr3g01627 435 SUPERFAMILY ARM repeat 127 412 IPR016024 -
Accr3g01627 435 Gene3D - 244 424 IPR011989 -
Accr3g01627 435 Coils Coil 398 418 - -
Accr3g01627 435 Gene3D - 121 243 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01627 Accr-Chr3 19889829 19891136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01627 5 435 U-box Gene Family AT5G37490 47.404 1.04e-124 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01627 - - qsa:O6P43_014260 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g01627 3 19889829 19891136 Accr3g01627 3 19889829 19891136 CCT
Accr3g01627 3 19889829 19891136 Accr3g01627 3 19889829 19891136 ECH