Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01626 ATGACCCGAAGGAAGGTGAAGCTCGCGTTCATTGGCAACGACTCTGCGAGGAAGACAACCTACAAGAAGAGGAGGAATGGGATGGTGAAGAAGGCTACTGAACTTGTCACCCTTTGTGGGGTTCAGGCCTGTATGCTAATATACAGTCCTTATGAAGCTGACGCTGAGATTTGGCCTTCCACCATGGCAGTCCAAAGAACAATTGTGAGGTTCAGGGATATGCCGGAGATGGAACAAAGCAAAAAAATGATGAACCAGATGAGCTTCACGAGGGAGCGGATCCAGAAAGTCAGAGAGCAAGTGAAGAGGATGAGGAAGAGCAACCGGGAGAAGGAGCTGACCCAGATCTTGTATCAGTACATGAGCACTGGGATTCTTGTGAAGAATTTGACTGTCAATGATTTCCATGATATGAAATGGCTGATTGAGCACAACCTGAGGGATGTCACTAGGAAGATGGAGGCTATGGAGGTTCAGCCTCAGAATGAAACCCAAGTCCAAAGTCAGGAACAAGAACAACAACAAGCAGGAGAAGATAACAACAATGGCAAGGGGACTATGGAGTTTAACATAAGCACATTGCAGAGGCAGCAGAATTTTATGGAACTGATGAACTATGCTGGAGAGGACACAATTCCATTTGAAGATGCCAATCTCTACAATACTTGGCCTAGCCCCTTTTACTTCTGA 690 0.4609 MTRRKVKLAFIGNDSARKTTYKKRRNGMVKKATELVTLCGVQACMLIYSPYEADAEIWPSTMAVQRTIVRFRDMPEMEQSKKMMNQMSFTRERIQKVREQVKRMRKSNREKELTQILYQYMSTGILVKNLTVNDFHDMKWLIEHNLRDVTRKMEAMEVQPQNETQVQSQEQEQQQAGEDNNNGKGTMEFNISTLQRQQNFMELMNYAGEDTIPFEDANLYNTWPSPFYF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01626 229 Coils Coil 80 114 - -
Accr3g01626 229 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Accr3g01626 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Accr3g01626 229 MobiDBLite consensus disorder prediction 157 187 - -
Accr3g01626 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr3g01626 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr3g01626 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr3g01626 229 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Accr3g01626 229 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Accr3g01626 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Accr3g01626 229 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Accr3g01626 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 175 - -
Accr3g01626 229 FunFam Agamous-like MADS-box protein AGL80 13 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01626 Accr-Chr3 19883964 19884653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01626 1 156 Type I MADS-box Gene Family AT5G48670 47.436 9.11e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Accr3g01626 SRF-TF 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01626 - - pcin:129298000 333.183