Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01600 ATGGCTACTGCCTTGGATATGTCACTTGATGATAGAATAAAAACCAGAAGTCATAGGGAGAGGGGTAGAGGGCGTGGCAGAGCCCCCCGTGGCCGTGGAGCAGGTCAGAATCTTGGTGGCGGAAGGATGCCTGGTGCAGCCCGTAGAGCTCCTCTTGGAATTAATTCTCGGCCATCTGCTTATGCCATTGCCAAGTCAATTCGCAGAACCAGGCGTTTTCCTTGGCAGCATGATTTATTTGAAGATAGCCTAAAAGCTGCAGGGATACAAGGAGTAGAAGTAGGCACAAAGTTGTATGTCTCCAACTTGGACCACGGAGTAACCAACGAAGATATAAGGGAACTGTTTGCGGAGATTGGAAACTTGAAGCGTTATGCAGTTCACTATGACAGAAATGGACGTCCTAGTGGTTCAGCTGAAGTTGTCTATACTAGAAGGAGTGATGCATTTGCAGCTCTTAAACGATACAATGATGTACTTTTGGATGGAAAGCCCATGAAGATTGAGGTTGTTGGTGCCAATGCAGAATTGCCTATCTCGGCCCGTGTGAATGTGTCTGGGATAAATGGGCAGAGGAAGAGGACAGTTGTTATGACGCCTGGAGGTCGACCTGGAGATAGAGCTGGAGGTCCTGCTATGTTTAATCGTGGCCCAGGTTGGGGACGGCGTGGTGGTGGAAGGAGCGGCGGTGGGGGCATGCGTGGCGGAATGCGTGGAGGTATGCGTGGTCGAGGGGGCAGTGGACGAGGTAGGGGTAGGGGTCGGGGTCGAGGGCGTGTGAAGAAGGATGCAGTTGAGAAGTCTGCTGAGGATCTTGACAAGGAACTGGAGACTTATCATGCTGAGGCCATGCACATCTCTTGA 864 0.5127 MATALDMSLDDRIKTRSHRERGRGRGRAPRGRGAGQNLGGGRMPGAARRAPLGINSRPSAYAIAKSIRRTRRFPWQHDLFEDSLKAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFAEIGNLKRYAVHYDRNGRPSGSAEVVYTRRSDAFAALKRYNDVLLDGKPMKIEVVGANAELPISARVNVSGINGQRKRTVVMTPGGRPGDRAGGPAMFNRGPGWGRRGGGRSGGGGMRGGMRGGMRGRGGSGRGRGRGRGRGRVKKDAVEKSAEDLDKELETYHAEAMHIS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01600 287 Coils Coil 262 282 - -
Accr3g01600 287 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 285 - -
Accr3g01600 287 SMART rrm1_1 97 169 IPR000504 GO:0003723
Accr3g01600 287 MobiDBLite consensus disorder prediction 198 271 - -
Accr3g01600 287 SUPERFAMILY RNA-binding domain, RBD 24 170 IPR035979 GO:0003676
Accr3g01600 287 CDD RRM_THOC4 96 169 - -
Accr3g01600 287 MobiDBLite consensus disorder prediction 1 52 - -
Accr3g01600 287 SMART FoP_duplication_2 215 287 IPR025715 -
Accr3g01600 287 Gene3D - 91 172 IPR012677 -
Accr3g01600 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 173 IPR000504 GO:0003723
Accr3g01600 287 Pfam C-terminal duplication domain of Friend of PRMT1 222 281 IPR025715 -
Accr3g01600 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01600 Accr-Chr3 19275473 19278324 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01600 95 170 Eukaryotic Initiation Factors Gene Family AT2G23350 39.474 9.61e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01600 K12881 - gmx:100801491 339.732