Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01587 ATGGGAGAGTCGGGAGGCATGTACCAGTACGAGCACCAGTCCTCGGCCTCTGCCAGTAGCCTCCGGAGGTCGTCGTCGTCACAGCCTTCTTCCCCTCGCATTTTTCACTGCCGTTACTGCCCCCGAAAGTTCTCCACCTACCATGCCCTCGGCGGCCACCAGAATGCGCACAAGCGCGAGAGAGCCGCCGACCACAACCTCACACCCAACGCCCTCCCATCTCCCCAGCCTCACCCCCTCCCCTCTCGCTTCTTCTACCATGTTGACCCCATTCATCACTTCGCCCACCACCCTCCGCCCCCTCCCTCCAAGCCTTCCAATCCTCTCGTGGACGACGTCAACCACCTCGACCTCACCCTTCGCCTCTGA 369 0.6233 MGESGGMYQYEHQSSASASSLRRSSSSQPSSPRIFHCRYCPRKFSTYHALGGHQNAHKRERAADHNLTPNALPSPQPHPLPSRFFYHVDPIHHFAHHPPPPPSKPSNPLVDDVNHLDLTLRL 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01587 122 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Accr3g01587 122 MobiDBLite consensus disorder prediction 51 82 - -
Accr3g01587 122 PANTHER ZINC FINGER PROTEIN JAGGED 13 101 IPR045320 GO:0003700
Accr3g01587 122 Gene3D Classic Zinc Finger 11 74 - -
Accr3g01587 122 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Accr3g01587 122 MobiDBLite consensus disorder prediction 1 34 - -
Accr3g01587 122 MobiDBLite consensus disorder prediction 8 33 - -
Accr3g01587 122 SUPERFAMILY beta-beta-alpha zinc fingers 32 62 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01587 Accr-Chr3 19128816 19129184 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01587 32 122 C2H2 Transcription Factor Family AT5G57520 36.190 7.96e-14 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr3g01587 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01587 - - pcin:129307163 117.087