Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01578 ATGGCGGACGTAATGGTAATGAATGAGATTGAGTCAACAGCATTACGGATTGGGGTCGATCTTTCCACCATTGACCTGGATTCCATCCATCTCCCTCCCGGCGATGATTTTGGTATCGTCAGTGACGATGAAGACATCTTCCAGGAGGAAAATCTGGAGTTGGATTCTGGATTTGGTAACATTATAGTTGTGGATAACCTCCCAGTTGTGCCTCAGGAGAAGTTTGGGAAGCTTGAAGGTGTAGTCCGTAAAATTTTTAGCCAGATTGGTGCGATTAAAGAGGATGGCCTTTTTATGCCTGTTGACTCTGGTTCGGAGAAAAGTTTAGGTTATTGCTTCATTGAGTATAATACTCCTCAGGAAGCTGAGCTTTCAAAAGAAAAGACGCATGGATACAAGTTGGATCGTGCACATGTTTTTTCAGTGAACATGTTTGATGACTTTGACCGGTTAATGAAAGTTCCAAATCAGTGGGCTCCTCCTGAAACAAAGCCATATACTCCAGGGGAAAATCTTCAGCATTGGCTTACCGATGTAAAAGCCCGAGACCAGTTTGTAATTCGTGCTGGTTCTGATACCGAGGTTTTATGGAATGATGCAAGGCATTTGAAGCCTGATCCTGTTTACAAGCGTACATTTTGGACTGAGAGTTTTGTGCAATGGTCCCCACTTGGTACATATTTGGCAACAGTTCACAGGCAAGGGGCAGCTGTCTGGGGAGGTGCTATGAACTTCAATCGTCTTATGCGATATGCTCATCCACAGGTAAAACTCATTGATTTTTCACCTGGGGAGAAGTATTTGGTAACTTATAGTAGCCATGAACCAAGCAATCCTCGTGATGCTAATAGGGTTGTGATAAATATATTTGATGTGAGGCTTGGTAAAGTGATAAGGGATTTCAAAGGAAGTGCAGATGACTTTGCTGTTGGAGGTACTGGGGGTGTTGCAGGGGTGTCATGGCCTGTTTTCAGATGGGGTGGTGGTAAAGATGATAAGTACTTTGCTAGAATGGGGAAAAATGTGATCTCAGTATATGAGACAGAGACCTTTTCTCTAATTGACAAGAAGTCCTTAAAGGTTGAAAATGTGATGGATTTCTGCTGGTCTCCAACAGATCCTATTCTTGCACTTTTTGTTCCTGAGATGGGTGGTGGGAACCAGCCTGCTAGGGTTAGTCTTGTTCAAATCCCCAGTAAAGAGGAACTCAGGCAGAAGAACCTTTTTAGTGTTAGTGATTGCAAGATGTACTGGCAAAGCAATGGGGACTACCTTGCTGTTAATGTAGATCGGTATACGAAGACCAAAAAAAGCACTTACACAGGCTTTGAACTTTTCCGTATAAAAGAACGTGATATACCCATTGAAGTTCTGGAGCTTGAGAATAAAAATGACAAGATTATTGCTTTTGCTTGGGAGCCCAAAGGTCATAGGTTTGCAGTTATTCATGGTGATAACCCTAAGCCCGATATTAGCTTTTACACCATGCGGACTGCTCAGAACACTGGCCGGATTTCAAAGCTTGCTACTTTGAAAGGAAAGCAGGCAAATGCTCTTTTTTGGTCACCAGCAGGCCGCTACATTGTGCTTGCAGGGTTGAAAGGCTTCAACGGACAATTGGAATTTTATAATGTTGATGAGCTTGAAACTATGGCTGCTGCTGAACATTTTATGGCAACAGATATTGAATGGGATCCGACAGGAAGGTATGTTGCAACTGCGGTGACTTCAGTCCATGAAATGGAAAATGGTTTCAATATATGGTCTTTCAATGGCAAACTTCTCTATCGTATCTTGAAGGATCACTTCTTTCAGTTCTTATGGCGGCCAAGACCACCATCTTTCTTGAGTCCAGAAAAAGAGGAAGAGATTGGAAGGAACTTGAAGAAGTATAGTAAGAAGTACGAGGCAGAAGACCATGACGTGTCCCTGCTTCTCAGTGAGCAGGAACGCGAGAAGCGTAGACTGTTGAAGGAAGAGTGGGACAAGTGGGTCAATCAATGGAAGCAGCTTCATGAAGAAGAAAAGTCGTTGAGGCAAAAGCTTAGAGATGGTGAAGACAGTGATGAAGAGGAGGAATACGAGGCTAAGGACATTGAAGTTGAAGAAGTGGTGGATGTGTCAGAGGAGATCCTTCCCTTTGAATACGAACAAGAGTGA 2160 0.4319 MADVMVMNEIESTALRIGVDLSTIDLDSIHLPPGDDFGIVSDDEDIFQEENLELDSGFGNIIVVDNLPVVPQEKFGKLEGVVRKIFSQIGAIKEDGLFMPVDSGSEKSLGYCFIEYNTPQEAELSKEKTHGYKLDRAHVFSVNMFDDFDRLMKVPNQWAPPETKPYTPGENLQHWLTDVKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRTFWTESFVQWSPLGTYLATVHRQGAAVWGGAMNFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRLGKVIRDFKGSADDFAVGGTGGVAGVSWPVFRWGGGKDDKYFARMGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPILALFVPEMGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVNVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDISFYTMRTAQNTGRISKLATLKGKQANALFWSPAGRYIVLAGLKGFNGQLEFYNVDELETMAAAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFLWRPRPPSFLSPEKEEEIGRNLKKYSKKYEAEDHDVSLLLSEQEREKRRLLKEEWDKWVNQWKQLHEEEKSLRQKLRDGEDSDEEEEYEAKDIEVEEVVDVSEEILPFEYEQE 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01578 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 29 711 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Accr3g01578 719 FunFam Eukaryotic translation initiation factor 3 subunit B 181 382 - -
Accr3g01578 719 CDD RRM_eIF3B 59 143 IPR034363 -
Accr3g01578 719 Gene3D - 59 143 IPR012677 -
Accr3g01578 719 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Accr3g01578 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 135 IPR000504 GO:0003723
Accr3g01578 719 SUPERFAMILY RNA-binding domain, RBD 59 146 IPR035979 GO:0003676
Accr3g01578 719 Gene3D - 177 384 IPR015943 GO:0005515
Accr3g01578 719 FunFam Eukaryotic translation initiation factor 3 subunit B 411 626 - -
Accr3g01578 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Accr3g01578 719 SMART rrm1_1 61 143 IPR000504 GO:0003723
Accr3g01578 719 SUPERFAMILY DPP6 N-terminal domain-like 217 599 - -
Accr3g01578 719 Gene3D - 405 619 IPR015943 GO:0005515
Accr3g01578 719 PIRSF Transl_init_eIF3b 6 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Accr3g01578 719 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Accr3g01578 719 MobiDBLite consensus disorder prediction 675 696 - -
Accr3g01578 719 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 49 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01578 Accr-Chr3 18933446 18938728 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01578 5 712 Eukaryotic Initiation Factors Gene Family AT5G27640 76.587 0.0 1176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01578 K03253 - gmx:100817394 1283.86