Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01560 ATGGAGAAGAACACAGGTGGTGGGTTGAGGAAAGGGACCTGGACCCATGAGGAAGACGATCTTCTCAGAGCTTGCGTTCACTACTATGGAGAAGGAAAATGGCATCTTGTTCCTCAAAGAGCTGGCTTGAAGAGATGCAGGAAAAGCTGCAGAATGAGATGGTTGAATTATCTGAAACCCAACATCAACCGAACGAGCTTCACTGAAGACGAGGTTGATATGATTCGAAGGTTCCATAAACTTCTCGGCAACAGATGGTCATTGATAGCTGGAAGGCTACCAGGAAGAACAGCGAACGACGTGAAGAACTTCTGGCACACCAACATGCGCAATAGGAAGAAGAAAGAAGAAAGCCAAGAAGCAAAAGCAAAAGAGGTGGTGATGCATAATAATGTAGAGAAGACGACGACAGAAGAAGTAAAACCGCACGTAGTGATAAAACCTCAGCCTCATACTTTCTCTAAGAATTCGCCGTGGCTGAGGAGAAATAATAATAATAATAATAATGAAAATAAGAAGATTGTTTCTGCAAGTGAGGGTGATGCAGCAGCCAGAAGTGAGGGTGATGCAGCAGCCAGAACTAGTTCAGGTGATTTCAAAGAGGGTATTGCAGAGCCATGTCCTGCCGCTGATTTTACGCAGAGAGATCGTCATCAGTCTGAAGAGTGGTGGGAGAGTTTAATGGACAAGGAAGTAGATGAAGGGCAGTTTGGGCATTTCGCCATGGAGCTTTGGGACTATGACTTTCTAAATATGGAAGGTCAATTTGGGGAAGGCAAGAGCTGTTGGGGTTCATGTAAGTTCTAA 807 0.4473 MEKNTGGGLRKGTWTHEEDDLLRACVHYYGEGKWHLVPQRAGLKRCRKSCRMRWLNYLKPNINRTSFTEDEVDMIRRFHKLLGNRWSLIAGRLPGRTANDVKNFWHTNMRNRKKKEESQEAKAKEVVMHNNVEKTTTEEVKPHVVIKPQPHTFSKNSPWLRRNNNNNNNENKKIVSASEGDAAARSEGDAAARTSSGDFKEGIAEPCPAADFTQRDRHQSEEWWESLMDKEVDEGQFGHFAMELWDYDFLNMEGQFGEGKSCWGSCKF 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01560 268 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Accr3g01560 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 113 IPR017930 -
Accr3g01560 268 FunFam Myb transcription factor 11 63 - -
Accr3g01560 268 MobiDBLite consensus disorder prediction 150 175 - -
Accr3g01560 268 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 8 226 - -
Accr3g01560 268 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Accr3g01560 268 CDD SANT 66 109 IPR001005 -
Accr3g01560 268 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Accr3g01560 268 Pfam Myb-like DNA-binding domain 64 107 IPR001005 -
Accr3g01560 268 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Accr3g01560 268 Gene3D - 65 141 - -
Accr3g01560 268 SMART sant 63 111 IPR001005 -
Accr3g01560 268 SMART sant 10 60 IPR001005 -
Accr3g01560 268 CDD SANT 13 58 IPR001005 -
Accr3g01560 268 Gene3D - 8 64 - -
Accr3g01560 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Accr3g01560 268 MobiDBLite consensus disorder prediction 149 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01560 Accr-Chr3 18583007 18584513 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01560 8 157 MYB Transcription Factor Family AT1G66370 60.265 8.64e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr3g01560 Myb_DNA-binding 4.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01560 - K16166 pcin:129304058 347.051