Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01548 ATGAAGCTTGAGTACCACAAGTCATGTGTGCTTGAGGAAGAAGATGGGTTGAGCAACGATTCTGCCATAACCCACCATTCTCCTTCTGCTCCTATGAGTGTTTATAAGGCCACAAGCAATCATCATCTTGCTGGGGAACCAGCTGCACAATCTCTCATCAACTTTAAAGCCAATAATGGTGGTGAATCTTTGCTTAGCTTTCAGCAGAAAGAGTATTATTTGTGGGAGAATAATGGTTTGCATCAGTGGAATTATCAGATTAGCCCCAGAAGCAATTCCGACCCAACAAGAGTGATTCAGGATTTTAATTGCATTCAAACTACTAGTAGTGGCTATGGATCAGGATCGTCAAAAGAGAAGCAGCAAGGTGAGAGTTCATCATCATCATATGGGTGGCTATACTCTGAACCAAATATTCCTTCTGATTCTAATAGCCTTCATCATGATTCTTCACCAACAGAAAAAGAAGCTTCCTCCAATAAGCGCCTTTCAATGGGAGAGCGCTTGCAAGCCTCAAAGAAGCAATGCACTGCTGCTAGTAAAACCCCAAAGCCAACAAAGTCATCAAACCCATCTAAGGATCCTCAAAGTATAGCAGCCAAGAACAGAAGAGAGAGGATAAGTGAGAGACTCAAGATACTTCAAGAACTGGTCCCTAATGGCTCCAAGGTTGATTTGGTGACCATGTTGGAGAAAGCCATTAGTTATGTGAAGTTTCTTCAACTACAAGTGAAGGTACTGGCAACTGATGAATTTTGGCCAGTGCAAGGAGGAAAGGCACCTGATATTTCTCAAGTGAAAGAAGCCATTGATGCCATTCTTTCATCCCAGAGAGACAGAAACTCAACCTCCAAGCAACAGAAATGA 867 0.4245 MKLEYHKSCVLEEEDGLSNDSAITHHSPSAPMSVYKATSNHHLAGEPAAQSLINFKANNGGESLLSFQQKEYYLWENNGLHQWNYQISPRSNSDPTRVIQDFNCIQTTSSGYGSGSSKEKQQGESSSSSYGWLYSEPNIPSDSNSLHHDSSPTEKEASSNKRLSMGERLQASKKQCTAASKTPKPTKSSNPSKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKAPDISQVKEAIDAILSSQRDRNSTSKQQK 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01548 288 MobiDBLite consensus disorder prediction 148 162 - -
Accr3g01548 288 CDD bHLH_AtIND_like 192 254 - -
Accr3g01548 288 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 47 250 IPR045843 GO:0003700|GO:0006355
Accr3g01548 288 FunFam Transcription factor bHLH83 189 248 - -
Accr3g01548 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 190 250 IPR036638 GO:0046983
Accr3g01548 288 MobiDBLite consensus disorder prediction 109 203 - -
Accr3g01548 288 MobiDBLite consensus disorder prediction 163 197 - -
Accr3g01548 288 Gene3D - 187 248 IPR036638 GO:0046983
Accr3g01548 288 SMART finulus 197 246 IPR011598 GO:0046983
Accr3g01548 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 191 240 IPR011598 GO:0046983
Accr3g01548 288 Pfam Helix-loop-helix DNA-binding domain 198 241 IPR011598 GO:0046983
Accr3g01548 288 MobiDBLite consensus disorder prediction 109 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01548 Accr-Chr3 18444687 18445997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01548 44 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G66470 48.496 8.06e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr3g01548 HLH 9.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01548 - - lang:109345122 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g01548 3 18444687 18445997 Accr3g01548 3 18444687 18445997 CCT
Accr3g01548 3 18444687 18445997 Accr3g01548 3 18444687 18445997 ECH