Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01547 ATGGACATTTCTTCCTCCTCCTCATCCTCCTCCGGTGCTCTCAGTCCCGACGCCAGTCTCGATGCCGACACCCCCCGAACTCCCCTCGCCGTCCGGCGAGCCCTCCAGCTCCTCCAATCTGACGACCAGGATTTCAAGCTCCAAGCTGCTCGTGATATTCGCCGACTCACTAAAACCTCCCAGCGTTGTCGCCGCCAGCTCTCTCAGGCTGTCGGTCCCCTCGTTTCCATGCTCCGATTTGACTCGTCCGAGTCCCATGAACCTGCTCTTCTAGCTTTGCTCAACCTTGCTGTCAAAGACGAAAAGAACAAAATCAGCATTGTGGAAGCTGGTGCTTTAGAACCGATAATTTCCTTCCTGAAGTCACAAAATATAAACCTGCAAGAGTGCGCCACTGCATCTTTGCTCACTTTATCCGCCTCTGCAACCAACAAACCAATCATTTGTGCTTCTGGAGCCATTCCTCTTCTTGTGGAGATCCTCAGAGATGGAAGCCCACAAGCTAAAGCTGATGCAGTAATGGCTCTTTCCAATTTATCTACCCACCCGGACAATCTTAGCGCCATTCTCAAAACAAACCCAATCCCTTTCATAGTTGATCTTCTGAAAACCTGTAAAAAATCCTCAAAAACAGCTGAGAAGTGCTGTGCTTTGATAGAATCCTTGGTGGGTTTTGATGAGGGCAGGACCGCCTTGACATCCGAGGAAGGTGCAGTCCTTGCAGTCGTGGAAGTCCTTGAAAATGGCAATCTCCAGAGCCGTGAGCACGCGGTTGGAGCACTGTTGACAATGTGTGAAAGTGACCGATGTAAATACAGGGAACCAATTCTCCGAGAAGGCGTAATCCCAGGACTTCTGGAGCTTACCGTTCAGGGAACACCCAAGTCGCAGTTAAAAGCCCGCAATCTCTTGCAACTACTGAGAGAAACTCCTTATCCCAGATCTGAAATTCAACCTGACACACTTGAGAACATAGTTTGCAATATCATATCCCAGATTGATGGGGATGAGCAGCCTGGTAAAGCAAAGAAGATGCTAGCTGAGATGGTCCAAGTCAGCATGGAGCAGAGTCTGAGACATTTACAGCAAAGGGCTCTTGTGTTCACCCCATCAAGTGATCGGCCTATTCCTAATTGTGCTTCTGAAGTATCTTCAAAATGA 1161 0.4901 MDISSSSSSSSGALSPDASLDADTPRTPLAVRRALQLLQSDDQDFKLQAARDIRRLTKTSQRCRRQLSQAVGPLVSMLRFDSSESHEPALLALLNLAVKDEKNKISIVEAGALEPIISFLKSQNINLQECATASLLTLSASATNKPIICASGAIPLLVEILRDGSPQAKADAVMALSNLSTHPDNLSAILKTNPIPFIVDLLKTCKKSSKTAEKCCALIESLVGFDEGRTALTSEEGAVLAVVEVLENGNLQSREHAVGALLTMCESDRCKYREPILREGVIPGLLELTVQGTPKSQLKARNLLQLLRETPYPRSEIQPDTLENIVCNIISQIDGDEQPGKAKKMLAEMVQVSMEQSLRHLQQRALVFTPSSDRPIPNCASEVSSK 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01547 386 PANTHER U BOX DOMAIN-CONTAINING 25 314 - -
Accr3g01547 386 FunFam U-box domain-containing protein 4 17 367 - -
Accr3g01547 386 SUPERFAMILY ARM repeat 31 333 IPR016024 -
Accr3g01547 386 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 111 153 IPR000225 GO:0005515
Accr3g01547 386 SMART arm_5 100 140 IPR000225 GO:0005515
Accr3g01547 386 SMART arm_5 182 224 IPR000225 GO:0005515
Accr3g01547 386 SMART arm_5 59 98 IPR000225 GO:0005515
Accr3g01547 386 SMART arm_5 225 266 IPR000225 GO:0005515
Accr3g01547 386 SMART arm_5 141 181 IPR000225 GO:0005515
Accr3g01547 386 MobiDBLite consensus disorder prediction 1 17 - -
Accr3g01547 386 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 152 194 IPR000225 GO:0005515
Accr3g01547 386 Pfam Armadillo/beta-catenin-like repeat 144 180 IPR000225 GO:0005515
Accr3g01547 386 Pfam Armadillo/beta-catenin-like repeat 101 135 IPR000225 GO:0005515
Accr3g01547 386 MobiDBLite consensus disorder prediction 1 25 - -
Accr3g01547 386 Gene3D - 18 367 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01547 Accr-Chr3 18413739 18416763 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01547 31 308 U-box Gene Family AT2G23140 34.643 2.31e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01547 - - gmx:100809684 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g01547 3 18413739 18416763 Accr3g01547 3 18413739 18416763 CCT
Accr3g01547 3 18413739 18416763 Accr3g01547 3 18413739 18416763 ECH