Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01540 ATGGGTTGCTGCTTCAGTGCGAGGATCAAAGCTGAAAGCCCTCCGCGGAAGGATAGGAACTCAAGCCATGACAGCAAAGAAGAGGATGGTTTGATGGGTGGAAGCAGCAAGTTCTCCACTGCCTCGGTGCCTCCAACTCCAAAACATCGAACAGAGGGTGAGATCTTGCAGTCTTCCGATTTGAAAAATTTCACATACAATGAGCTAAGGACAGCTACAAGGAACTTTCGTCCGGACAGTATGGTGGGTGAAGGCGGTTTTGGTGGCGTATTTAAGGGTTGGCTTGATGAGCAGACACTTGCACCTGCTAAACCTGGCATTGGGATAGTCATTGCTGTCAAGAAGCTTAACCAAGAAGGCTCCCAGGGACACAATGAGTGGTTGACAGAGATAAATTTTCTGGGGCAGCTGCATCATCCTAACCTTGTAAAATTGATCGGCTACTGCTTAGAGGATGAGCAGCGGCTTTTGGTATATGAGTTTTTGACCAAAGGCAGCTTGGATAATCATTTATTTCGAAGGACAACTCATGTTGAACCACTTTCTTGGAGCAACCGCATGAAAATTGTACTTGATGCTGCAAAGGGTCTTGCATTTCTTCATAGTGACGGAGTAAAAGTGATATATCGAGACCTAAAAGCTTCTAATATCTTGCTTGATTCGAACTTCAATGCAAAGCTATCTGATTTTGGATTGGCAAAGGAAGGACCATCTGGTGATAGGAGCCATGTCTCTACAAGGGTTATGGGCACATATGGCTATGCTGCTCCTGAGTATATGGCCACAGGTCACCTGACCAAGAAGAGTGATGTCTACACGTTCGGGGTTGTTCTGCTTGAAATTATGTCAGGCAAACGTGCATTGGACAGAAACAGGCCAGGCAGGGAACAGAATTTAGTGGAATGGGCCAAGCCGTACCTTTCAAGCAAGCGCCGGATTTTCCAAGTTATGGACGCTCGTATTGAAGGCCAGTACCTGGTACGTGAAGCCATGAAAGTAGCTAAAATCGCGATCCAATGCCTGTCTGTAGAACCCCGGTTTAGACCGACCATGGCCGACGTGGTAAGAGCATTGGAACAGCTTCAGGATTCGAGCGATACAGGCAGCACAAGCAGCAGCAGTACTGTTCCTAGGCAGCACAAGAGAAGTACGAATGAATCTTTAAATGGAGCTGACAGTTCTGAGCCTAGATAG 1194 0.469 MGCCFSARIKAESPPRKDRNSSHDSKEEDGLMGGSSKFSTASVPPTPKHRTEGEILQSSDLKNFTYNELRTATRNFRPDSMVGEGGFGGVFKGWLDEQTLAPAKPGIGIVIAVKKLNQEGSQGHNEWLTEINFLGQLHHPNLVKLIGYCLEDEQRLLVYEFLTKGSLDNHLFRRTTHVEPLSWSNRMKIVLDAAKGLAFLHSDGVKVIYRDLKASNILLDSNFNAKLSDFGLAKEGPSGDRSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYTFGVVLLEIMSGKRALDRNRPGREQNLVEWAKPYLSSKRRIFQVMDARIEGQYLVREAMKVAKIAIQCLSVEPRFRPTMADVVRALEQLQDSSDTGSTSSSSTVPRQHKRSTNESLNGADSSEPR 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01540 397 SUPERFAMILY Protein kinase-like (PK-like) 53 363 IPR011009 -
Accr3g01540 397 PANTHER OS01G0588500 PROTEIN-RELATED 30 362 - -
Accr3g01540 397 FunFam Serine/threonine-protein kinase BIK1 44 161 - -
Accr3g01540 397 MobiDBLite consensus disorder prediction 361 397 - -
Accr3g01540 397 ProSitePatterns Protein kinases ATP-binding region signature. 82 115 IPR017441 GO:0005524
Accr3g01540 397 ProSiteProfiles Protein kinase domain profile. 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr3g01540 397 SMART serkin_6 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr3g01540 397 MobiDBLite consensus disorder prediction 11 31 - -
Accr3g01540 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Accr3g01540 397 MobiDBLite consensus disorder prediction 1 57 - -
Accr3g01540 397 Gene3D Phosphorylase Kinase; domain 1 50 161 - -
Accr3g01540 397 Pfam Protein tyrosine and serine/threonine kinase 80 358 IPR001245 GO:0004672|GO:0006468
Accr3g01540 397 Gene3D Transferase(Phosphotransferase) domain 1 162 386 - -
Accr3g01540 397 FunFam Serine/threonine-protein kinase PBS1 162 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01540 Accr-Chr3 18280265 18283177 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01540 1 371 Glycoside Hydrolase AT3G07070 45.812 1.27e-107 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Accr3g01540 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01540 - - gmx:100800735 591.267