Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01535 ATGAGGAGGTACAGTCCAGCATACTACAGTCCTCCTAGGAGAGGATATGGTGGTGGAGGGAGAAGCCCTCCTAGGAGGGGATATGGTGGAGGTAGACGCAGGGAACAAAATCATGGGAGCCTTTTGGTTCGGAACATTCCTCTCGATTGCCGATCTGAGGAACTTCGAGTTCCATTTGAGCGATTTGGACCTGTCCGGGATGTCTACCTACCGAAGGACTATTACACTGGAGAACCTCGTGGATTTGCATTTGTGCAATTTGTTGATCCTTATGATGCTTCAGAGGCACAGTATCACATGAATGGACAGATTTTTGCTGGAAGGGAAATATCTGTGGTTCTTGCGGCAGAGTCAAGGAAAAGACCTGAGGAGATGCGTCAAAAGTCAAGGAGAGGACCATCAGGCTATGGGGGGCGAAGGTCAGCTTATCATGGACGATCCCGATCTCGTTCAGTGTCAAGATCACGCTCGCCACGTTATCGCTCTGGTTCTAAAAGTAGATACCGTTCAAGGTCCTATTCTCCTGCCCCAAGAAGGCGAGGTGACTATTCTGTTTCCCCTAGACCACGTGGGATGCATCCTAGGTCTCCAAGAGGTCCTTCTGTGGAGCGAGAGGGTGATCAAAAGCGCAGGTCATATTCTCCAGGTTATGGCGATGGCCCAGATTATCCTGCAGCCAATGGATATGACGAGAAACCTATGTATGACTCTGAGGCTGCACGAGACCAGTGGAGGCAGTCGCCACGCAGAGCATCAAGATCACCCATTGGGTCAGGATCAAGGTCTGCTGATTTGTCTCCTAGACATGGCAGATGA 816 0.5049 MRRYSPAYYSPPRRGYGGGGRSPPRRGYGGGRRREQNHGSLLVRNIPLDCRSEELRVPFERFGPVRDVYLPKDYYTGEPRGFAFVQFVDPYDASEAQYHMNGQIFAGREISVVLAAESRKRPEEMRQKSRRGPSGYGGRRSAYHGRSRSRSVSRSRSPRYRSGSKSRYRSRSYSPAPRRRGDYSVSPRPRGMHPRSPRGPSVEREGDQKRRSYSPGYGDGPDYPAANGYDEKPMYDSEAARDQWRQSPRRASRSPIGSGSRSADLSPRHGR 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01535 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Accr3g01535 271 SMART rrm1_1 40 113 IPR000504 GO:0003723
Accr3g01535 271 MobiDBLite consensus disorder prediction 118 271 - -
Accr3g01535 271 SUPERFAMILY RNA-binding domain, RBD 36 145 IPR035979 GO:0003676
Accr3g01535 271 Gene3D - 30 155 IPR012677 -
Accr3g01535 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
Accr3g01535 271 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 34 232 - -
Accr3g01535 271 MobiDBLite consensus disorder prediction 234 248 - -
Accr3g01535 271 MobiDBLite consensus disorder prediction 143 166 - -
Accr3g01535 271 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 isoform A 32 172 - -
Accr3g01535 271 MobiDBLite consensus disorder prediction 1 39 - -
Accr3g01535 271 MobiDBLite consensus disorder prediction 197 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01535 Accr-Chr3 18220332 18224597 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01535 7 102 Eukaryotic Initiation Factors Gene Family AT3G11400 37.500 5.97e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01535 K12900 - gmx:100804294 324.324