Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01522 ATGGCTACGGGGACGACGCCATCTTCTTATTGGTGTTACAGATGCAGTCGGTTTGTGAGGGTCCGGAGGCAGGACACGGTGGTTTGTCCCAACTGCGACGGTGGATTTGTGGAGGAGATTGAGCAAATGCCTCGCCCTGCTTCTATCGTCGATTCGCGCCGGCGGAGGTTTCCGGCGGCTTCGATGTACATGATTGGCGATCATCCCCCCGGTTCCGGACAGCCTCTGCGTCCTGCTTTGAGGAGGGCTCGTCGGGGCACCGGTGATATTTCTATGGTGAATCCGGTTGTCGTGCTCCGGGGGTCGCCTAACCGGGCAGATAATGATTCCGGCGGAGGAGGACATGGGCGCGGGTTTGATCTTTACTACGAAGACGGGTCCGGGTTGGGTCTTCGTCCTCTGCCTCCGAACATGTCAGAGATGCTTCTGGGATCTGGGATCGATAGGCTTCTGGAACAGCTTTCTCAGATTGAAATGAACGGTATTTCGCGATACGAGCCACCTCCGGTTTCGAAAACCGCCATCGATTCACTGCCGACGATTGAGATTCACGAGCACCATCTCGCGACGGAACCTCACTGCGCCGTTTGTATGGAGCCTTTTGAATTGGGCACAAACGCTCGTGAATTGCCCTGCAAGCACATTTACCATTCAGATTGCATTTTGCCGTGGCTTGCGCTCCGGAATACTTGCCCTGTTTGCCGGCAGGAGCTCCCGGCAGATACGCAGGGCGTTAACGATCCTGTTTCTGGGCATTCTCTGGCTTGGAACGACGATGACAATGTGGGATTGACTATTTGGAGGCTTCCTGGTGGTGGCTTCGCGGTGGGAAGGTTCGCCGGCGGGAGAAGAAGTACTCCTGATCGTGAGCTTCCTGTTGTGTACACAGAAATGGATGGTGGTATTGGAAATGGCGGCGAACCGAGGAGAGTGACTTGGTCGACGACGACGGAGGGTCGACGAAGAGACAGTGGAGGAGGAGGAGGAGGATTGCGCAAAATGTTTCGTAATCTTTTTGGTTGCTTCACTCCTAGACCTCGAGCTCAATTCTCTGCTTCTTCTTCTTCTTCATCATCTCCTTCTCCAGATCCAGAACCTCGACCCTTGAGAAGGAGTACTTCTCGTTCTCGTCCCGTCATGAATACCACGATGCGTTCCCGAAGAACTTGGTCTCTCGACGGCAATGGCGGAACCAGACCTTGGTAA 1206 0.5464 MATGTTPSSYWCYRCSRFVRVRRQDTVVCPNCDGGFVEEIEQMPRPASIVDSRRRRFPAASMYMIGDHPPGSGQPLRPALRRARRGTGDISMVNPVVVLRGSPNRADNDSGGGGHGRGFDLYYEDGSGLGLRPLPPNMSEMLLGSGIDRLLEQLSQIEMNGISRYEPPPVSKTAIDSLPTIEIHEHHLATEPHCAVCMEPFELGTNARELPCKHIYHSDCILPWLALRNTCPVCRQELPADTQGVNDPVSGHSLAWNDDDNVGLTIWRLPGGGFAVGRFAGGRRSTPDRELPVVYTEMDGGIGNGGEPRRVTWSTTTEGRRRDSGGGGGGLRKMFRNLFGCFTPRPRAQFSASSSSSSSPSPDPEPRPLRRSTSRSRPVMNTTMRSRRTWSLDGNGGTRPW 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01522 401 MobiDBLite consensus disorder prediction 346 401 - -
Accr3g01522 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 241 IPR013083 -
Accr3g01522 401 SMART ring_2 194 234 IPR001841 -
Accr3g01522 401 FunFam E3 ubiquitin-protein ligase RING1-like 156 241 - -
Accr3g01522 401 CDD RING-H2_RNF126-like 194 235 - -
Accr3g01522 401 Pfam zinc-ribbon 9 40 IPR039525 GO:0061630
Accr3g01522 401 MobiDBLite consensus disorder prediction 297 331 - -
Accr3g01522 401 Pfam Protein of unknown function (DUF1117) 262 364 IPR010543 -
Accr3g01522 401 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 100 239 - -
Accr3g01522 401 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
Accr3g01522 401 SUPERFAMILY RING/U-box 174 244 - -
Accr3g01522 401 Pfam Ring finger domain 193 235 IPR001841 -
Accr3g01522 401 MobiDBLite consensus disorder prediction 374 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01522 Accr-Chr3 17957222 17958427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01522 129 247 C3H Transcription Factor Family AT5G01980 40.336 3.12e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01522 K11982 - qsa:O6P43_014338 469.159