Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01487 ATGGCTCCTTCAGAAGTCAATCATCTCTCTCACCCTTGTATATATGGGGATTTTGCTTCCTCATACTCGGAGAAGAAGTCTGGATTTATGAAATGGATTAGTAGGCTTTTCAAAGGTGGGTCCAGTCGAGGAAGGGGAGGTCGTCATCTTCAGCAGCCTTCAGAAGAAAATTTGGTTTGGCGTAATCCATCTAGATCATTGGATGACCGTTCTAGGGGGGCTCAGAAGGAGAAAGAGGATCTGGACCACGCAATTGCTCTTTCTTTAGCTGAAGATTTGAAGAGACCAAATGGATATAGATGGCGTGGAGAAATTGATGAAGATTACGGGAGTGAATTTCAGGACAACCATAACTCATCTGCACATCCTCCATATGGCCGGGCAACATATGGGGAAATTAGGGTATGTGGTGGGTGCAAGCGGGAGATAGCCTATGGGAGTTGTTTAAAATGCAATAATATTTATTTCCATCCAGGGTGCTTTCGCTGTCACTCTTGTCGCTACCCCATTACTGAGCAGGAGTTTTCTTTATCAGGGAAGAATCCGTATCACAAGTCCTGTTTCAAAGATCTGACCCATCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCTGCCGGTTTGATTGAGTATAGGTGTCACCCATTTTGGTCCCAAAAATACTGTCCAGTTCATGAATACGATGATACAGCTCGCTGCTGTAGTTGTGAAAGATTGGAGTCTTCGAATGCAAAATACTATAGTTTGGAAGATGGGCGGAGTTTATGTTTAGAGTGCATGGAGTCAGCTATTATGGACACTGGAGATTGTCAACCTCTTTACCATGCTATTAGAGATTTTTATGAAGGAATTAATATGAAAATAGACCAACAAATTCCTATGCTTCTGGTTGAGAGGCAAGCACTCAATGAAGCTATTGTTGGGGATAAAAATGGTTACCATCACATGCCAGAGACAAGAGGCTTGTGCCTTTCTGAAGAGCTGACTGTCACCAGTATTCATCGAAGACCAAGAATTGGAGGCCACCGGCTTATCGGAATGCGAACCCATCCTCAAAAGCTAAATAGAAAATGTGAAGTTACTGCCATTCTTGTTCTCTACGGTCTTCCAAGGTTGCTCACAGGCGCTATCCTTGCCCACGAGTTGATGCACGGCTGGTTACGTCTTAAAGGTTACCGTAATCTTAATCCTGAAGTAGAGGAAGGAATCTGTCAGGTTCTGTCTTATATGTGGCTTGAGTCAGAAGTAATGCCTAGCCTTAAAAGCATGCCTTCAACTTCAGCAGCTTCTTCCTCCTCCTCCTCCTCCTCTTCCTATTACTCACACTACTCATCATCATCTAAGAAAGGAGCCCAATCTGAAGTTGAAAATAGACTGGGTCAGTTTTTCATGAATCAGATAGCCAATGATTCTTCTCCAGCATATGGGGGTGGCTTTAGATCTGCTAACGAGGCTGTGAACAGATATGGTTTACGCAGTACTCTTGAACATATTCGTTTGACTGGTAGTTTCCCTCTGTAA 1527 0.4316 MAPSEVNHLSHPCIYGDFASSYSEKKSGFMKWISRLFKGGSSRGRGGRHLQQPSEENLVWRNPSRSLDDRSRGAQKEKEDLDHAIALSLAEDLKRPNGYRWRGEIDEDYGSEFQDNHNSSAHPPYGRATYGEIRVCGGCKREIAYGSCLKCNNIYFHPGCFRCHSCRYPITEQEFSLSGKNPYHKSCFKDLTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPVHEYDDTARCCSCERLESSNAKYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDFYEGINMKIDQQIPMLLVERQALNEAIVGDKNGYHHMPETRGLCLSEELTVTSIHRRPRIGGHRLIGMRTHPQKLNRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPSLKSMPSTSAASSSSSSSSSYYSHYSSSSKKGAQSEVENRLGQFFMNQIANDSSPAYGGGFRSANEAVNRYGLRSTLEHIRLTGSFPL 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01487 508 CDD LIM_DA1 136 188 - -
Accr3g01487 508 Gene3D Cysteine Rich Protein 128 208 - -
Accr3g01487 508 MobiDBLite consensus disorder prediction 41 78 - -
Accr3g01487 508 ProSitePatterns LIM zinc-binding domain signature. 136 170 IPR001781 -
Accr3g01487 508 Pfam Protein DA1 285 503 IPR022087 -
Accr3g01487 508 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 162 215 - -
Accr3g01487 508 ProSiteProfiles LIM domain profile. 134 194 IPR001781 -
Accr3g01487 508 PANTHER PROTEIN DA1-RELATED 2 32 507 IPR045218 -
Accr3g01487 508 Pfam LIM domain 136 190 IPR001781 -
Accr3g01487 508 MobiDBLite consensus disorder prediction 62 78 - -
Accr3g01487 508 SMART lim_4 135 187 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01487 Accr-Chr3 17371175 17375602 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Accr3g01487 DA1-like 5.6e-99 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01487 - - gmx:100784976 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g01487 3 17371175 17375602 Accr3g01487 3 17371175 17375602 CCT
Accr3g01487 3 17371175 17375602 Accr3g01487 3 17371175 17375602 ECH