Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01459 ATGGTGGTCACGGAGGAGTTTCATGCTGTTGATATAGATAATGGTGGTCGGCGTAGCAGCTCCGTCGGTGACGGTGGCGATGGACGGCATCAGGACGCTGCCGACAGTGTAGATAAGGAGCAAAAATGCTCCGACGAGGTTTCTAATGCCGAGATTGTGGGAGTGCCGGAAAAAGAGAAGGGATCCCCTGCGTCGGAGTGTACGGTGGAGGTGGATTTGGGGAATGTGGTGACTGAAACTAAGGTACATTTGGGTGAAACGAAGAGGGATTGTAGGATTTGCCATCTTAGTATGGATATGACTAATCATGAATCTGGGAGCATTGAGCTCGGATGTTCCTGCAAGGACGATTTGGTTGCTGCTCACAAGCAATGTGCTGAGGCTTGGTTCAAGATCAAGGGAAACAAAACCTGCGAAATCTGTGGATCAATTGCACGCAATGTAACTGGAGCTTTTGAAGTAGAAAATGTTGAACAGTGGAACGAGTCAAATGATGCCACCTTGGCAGCCCCAACTGGACCTGTGTCCCATGGTGAACATAGAAGTTTCTGGAGGGGCCACAGATTCTTGAACTTCCTACTAGCCTGTATGGTCTTTGCCTTTGTCATATCTTGGCTTTTCCACTTCAATGTACCCTCATGA 642 0.4844 MVVTEEFHAVDIDNGGRRSSSVGDGGDGRHQDAADSVDKEQKCSDEVSNAEIVGVPEKEKGSPASECTVEVDLGNVVTETKVHLGETKRDCRICHLSMDMTNHESGSIELGCSCKDDLVAAHKQCAEAWFKIKGNKTCEICGSIARNVTGAFEVENVEQWNESNDATLAAPTGPVSHGEHRSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01459 213 Pfam RING-variant domain 91 141 IPR011016 GO:0008270
Accr3g01459 213 SUPERFAMILY RING/U-box 88 144 - -
Accr3g01459 213 PANTHER ZINC FINGER, RING-CH-TYPE 31 212 - -
Accr3g01459 213 MobiDBLite consensus disorder prediction 23 46 - -
Accr3g01459 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 150 IPR013083 -
Accr3g01459 213 SMART ringv_2 90 142 IPR011016 GO:0008270
Accr3g01459 213 MobiDBLite consensus disorder prediction 1 46 - -
Accr3g01459 213 ProSiteProfiles Zinc finger RING-CH-type profile. 83 148 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01459 Accr-Chr3 16899515 16901854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01459 5 213 C3H Transcription Factor Family AT5G05830 55.450 3.08e-70 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01459 - - cave:132188815 279.256