Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01449 ATGGAAACTCTGTACCCATCTTCTTTTGTGCCAAACTCAGACTGGTACGTTCAAGATAGCTTCAGCAACACAGAATGGACGAGAGAGGAGAACAAGAGGTTCGAGAGTGCCCTTGCCATATACGATAAGGACACACCAGATAGGTGGCTGAAGGTGGCAGCCATGATCCCAGGTAAAACCGTGTACGATGTGATCAAGCAGTACAGAGAACTAGAAGAAGACATCTGCGAAATCGAAGCAGGTCGGGTCCCAATACCTGGGTACCTAGCTTCTTCTTTCACCTTTGAGTTGGTTGATCACCAGAATTATGATGCATACAGAAAGAGGCCTGTGACTTTCAAGGGTGGTTCTTCTTCAGATCATGAGAGAAAGAAAGGCGTGCCTTGGACTGAAGATGAACACAGGCGTTTCCTGATGGGGCTTTTGAAGTATGGTAAAGGAGATTGGAGGAACATTTCAAGGAACTTTGTTGTGACAAAGACACCAACTCAAGTGGCAAGTCATGCTCAGAAGTACTATATAAGACAGAAGCTTTCTTCTGGATCAGGCAACAACAAAAGGAGACCCAGTATACACGACATAACCGTTCTTAATCTCACAGAACCTTCCACCACCACCCCACAAGAAAACACCAACAACAAGCCCCTTCAATTCAATGATCAGTCTCCTATGTTCTCGCATCAGAAGCCAAATGATGGGGTTTTTTTCGACCCTAGTTGTGACAGTTTCTTGCATACATCATCTCCTTCTGATGATATTGACTGTGTCCTTCATGAGGCTTATGGTTACACCAACCTTAAAATCCAGGGTTTTCGGGAAAATCCAGGGGAATTCAGTAACCCAGCAGCTGTCTTAGGTATTCATGCATTGTAA 873 0.4467 METLYPSSFVPNSDWYVQDSFSNTEWTREENKRFESALAIYDKDTPDRWLKVAAMIPGKTVYDVIKQYRELEEDICEIEAGRVPIPGYLASSFTFELVDHQNYDAYRKRPVTFKGGSSSDHERKKGVPWTEDEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKLSSGSGNNKRRPSIHDITVLNLTEPSTTTPQENTNNKPLQFNDQSPMFSHQKPNDGVFFDPSCDSFLHTSSPSDDIDCVLHEAYGYTNLKIQGFRENPGEFSNPAAVLGIHAL 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01449 290 FunFam transcription factor MYB1R1 127 178 - -
Accr3g01449 290 Gene3D - 127 178 - -
Accr3g01449 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 121 177 IPR017930 -
Accr3g01449 290 NCBIfam myb-like DNA-binding domain, SHAQKYF class 124 176 IPR006447 GO:0003677
Accr3g01449 290 ProSiteProfiles Myb-like domain profile. 18 72 IPR001005 -
Accr3g01449 290 CDD SANT 128 172 IPR001005 -
Accr3g01449 290 CDD SANT 25 71 IPR001005 -
Accr3g01449 290 SUPERFAMILY Homeodomain-like 123 177 IPR009057 -
Accr3g01449 290 Pfam Myb-like DNA-binding domain 128 172 IPR001005 -
Accr3g01449 290 Pfam Myb-like DNA-binding domain 25 70 IPR001005 -
Accr3g01449 290 SMART sant 125 175 IPR001005 -
Accr3g01449 290 SMART sant 22 74 IPR001005 -
Accr3g01449 290 ProSiteProfiles SANT domain profile. 129 177 IPR017884 -
Accr3g01449 290 ProSiteProfiles Myb-like domain profile. 121 173 IPR001005 -
Accr3g01449 290 FunFam Transcription factor SRM1 18 85 - -
Accr3g01449 290 SUPERFAMILY Homeodomain-like 24 78 IPR009057 -
Accr3g01449 290 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 22 233 IPR043363 -
Accr3g01449 290 Gene3D - 19 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01449 Accr-Chr3 16763881 16764966 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr3g01449 Myb_DNA-binding 4.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01449 - - gmx:778039 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g01449 3 16763881 16764966 Accr3g01449 3 16763881 16764966 CCT
Accr3g01449 3 16763881 16764966 Accr3g01449 3 16763881 16764966 ECH
Accr7g01936 7 51400435 51401850 Accr3g01449 3 16763881 16764966 ECH
Accr3g01449 3 16763881 16764966 Accr7g01936 7 51400435 51401850 ECH