Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01394 ATGTGTGGTGGCTCAAAAACTAAACTTTCTACCTCTAATAACGACATGGATAGCGAGTTTCTGAAGCAGAATCATGATGTTCTCTGTAACATCTCAAGTCTGCTCGAGCTGTCCGCGACTGATGATCTTGAAATTTTCAGGAGGGAAGTAGAAGAGAACGGTTCTGATGCGAACGAGGAAAGCTTTTGGTATGGAAGAAGAATTGGAACAAGGAAGATGGGATTGGAAAAGAGGACGCCTCTCATGGTTGCTTCTTTATTTGGAAGCACTGAGGTACTGAAGTATATTATTGAAACAGGCAGAGTTGATGTGAACAGGGCCTGTGGTTCCGATAAGGCCACAGCTCTCCACTGCGCTGTTGCCGGTGGCTCTGAATCCTCACTTCAGATTGTTAAGCTGTTGCTTGAAGCGAAGGCTGATCGTGATTGCCTTGATGCTAGCGGAAACAAGCCTGTTAATTTGATTGCTCCTGCTTTTAGTTCTTCATCCAACCTGCGAAGGAAGGCGATGGAGTCATTGCTGAGAGGTGATGAATTAAGTGATCAAATTATTGAACAGGAGGCAGAGCAACAGAAAATTACAGCACCGGCAGAGAAGAAAGAATATCCTGTTGATATATCTTTGCCTGACATAAACAATGGTATATATGGAACAGATGAGTTCAGGATGTACAGCTTCAAGGTGAAGCCATGTTCAAGGGCATACTCTCATGACTGGACCGAGTGTCCATTTGTTCACCCCGGGGAGAATGCAAGGAGGAGGGATCCACGGAAGTATCCTTACAGCTGCGTTCCTTGCCCGGAATTTCGCAAGGGAAGCTGCCCGAAAGGGGATGCCTGTGAGTACGCTCACGGTGTTTTTGAGTCATGGCTTCATCCTGCTCAATACCGAACAAGGCTTTGCAAGGATGAGATTGGTTGCTCACGAAAAGTTTGCTTCTTTGCTCACAAACCTGAAGAGTTACGCCCTGTGTATGCTTCCACTGGTTCAGCAATGCCTTCACCAAAATCCTTTTCAGCTAGTGGGCTTGACACTACAGTTATGAGTCCTTTAGCTCTTAGCTCCTCATCTTTGCCAATGTCAACAGTTTCAACACCGCCCTTGTCTCCTTTGGCTGCTTCATCTCCCAAGAGTGGAAGCTTGTGGCAGAACAAAATAAACCTCACCCCACCAGCCCTGCAGCTCCCGGGTAGCCGGCTGAAGGCGGCCTTAAGTGCTAGGGATTTTGACTTGGAGATGGAACTACTCGGGCTAGAAAGTCCGGCTAACCAGCACCAGCAGTTGATAGAAGAGATAGCTCGAATCTCTTCCCCATCTTTCCGAAACAAAGAGTATGGTAGGATAGGTGATTTGAAGCCAACGAACCTTCATGACCTTTTGGGATCTGTTGATCCTTCTGTTCTTTCTCAGCTTCATGGACTCTCACCACAAGCTTCAATGCCTACTCAGCTGCAATCTCCCAATGGGCTTCAAATGCACCAAAACATGAACCACCTTCGCTCAAGCTATCCAACCAATCTTCCTTCCTCACCGGCAAGAAGTGCCTTGGGTTCAGGGTTTGACTCATCCTCTGCTGTGGCAGCAGCAGTGATGAACTCGAGATCTGCAGCATTCGCAAAGCGAAGTCAAAGTTTTATTGATCGAGGAGCAATATCGCCCCACCATTTCGGTCACTCCACAGCCCCCAACACCGGACTTTCTGATTGGAGATCGCCTGATGGGAAACTGGATTGGGGCATGAATGGAGATGAGCTGAACAAACTGAAGAAATCTGCTTCTTTTGGGTTCAGAAACAACGGAAATATTAACAACACCGGGGCACGGTCTGAAAATTTTGAGCCAGACGTGTCATGGGTTAATTCGTTGGTTAAAGATGTCCCCCCTGAGAAGCAGCAGCAACTTGATCCCAGTAGAGAGATGCTTTCACCATGGATGGAGCAACTGTATAGAGAACACGAGCAGATAGCTGCATAA 1974 0.4721 MCGGSKTKLSTSNNDMDSEFLKQNHDVLCNISSLLELSATDDLEIFRREVEENGSDANEESFWYGRRIGTRKMGLEKRTPLMVASLFGSTEVLKYIIETGRVDVNRACGSDKATALHCAVAGGSESSLQIVKLLLEAKADRDCLDASGNKPVNLIAPAFSSSSNLRRKAMESLLRGDELSDQIIEQEAEQQKITAPAEKKEYPVDISLPDINNGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCPKGDACEYAHGVFESWLHPAQYRTRLCKDEIGCSRKVCFFAHKPEELRPVYASTGSAMPSPKSFSASGLDTTVMSPLALSSSSLPMSTVSTPPLSPLAASSPKSGSLWQNKINLTPPALQLPGSRLKAALSARDFDLEMELLGLESPANQHQQLIEEIARISSPSFRNKEYGRIGDLKPTNLHDLLGSVDPSVLSQLHGLSPQASMPTQLQSPNGLQMHQNMNHLRSSYPTNLPSSPARSALGSGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRGAISPHHFGHSTAPNTGLSDWRSPDGKLDWGMNGDELNKLKKSASFGFRNNGNINNTGARSENFEPDVSWVNSLVKDVPPEKQQQLDPSREMLSPWMEQLYREHEQIAA 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01394 657 ProSiteProfiles Zinc finger C3H1-type profile. 260 287 IPR000571 GO:0046872
Accr3g01394 657 Gene3D - 261 323 - -
Accr3g01394 657 SMART ANK_2a 111 143 IPR002110 GO:0005515
Accr3g01394 657 SMART ANK_2a 76 106 IPR002110 GO:0005515
Accr3g01394 657 Pfam Ankyrin repeats (many copies) 78 135 IPR002110 GO:0005515
Accr3g01394 657 SUPERFAMILY Ankyrin repeat 32 153 IPR036770 -
Accr3g01394 657 SMART c3hfinal6 260 286 IPR000571 GO:0046872
Accr3g01394 657 SMART c3hfinal6 295 318 IPR000571 GO:0046872
Accr3g01394 657 FunFam Zinc finger CCCH domain-containing protein 66 218 286 - -
Accr3g01394 657 Gene3D - 30 177 IPR036770 -
Accr3g01394 657 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
Accr3g01394 657 PANTHER UNKEMPT FAMILY MEMBER 36 626 IPR045234 -
Accr3g01394 657 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 265 285 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01394 Accr-Chr3 15771420 15773393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01394 1 625 C2H2 Transcription Factor Family AT5G12850 40.929 4.32e-144 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr3g01394 Ank_4 5.8e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01394 - - gmx:100783376 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g01394 3 15771420 15773393 Accr3g01394 3 15771420 15773393 ECH