Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01371 ATGGGAGGCACTTCCCCTTGTGCTTCATGCAAGTTGCTACGACGCCGTTGCGCCAAAGATTGCATCTTTGCTCCTTATTTCCCTTCCGACGACCCTCAAAAGTTCGCCATCGTTCACAAGGTCTTCGGAGCTAGCAACGTCGGCAAAATGTTGCAGGAGCTTCCAGCTCATCAGAGAGCAGACGCTGTGAGCAGCTTGGTGTATGAAGCAAATGCAAGGGTACGAGACCCAGTGTACGGGTGTGTGGGGGCCATATCGTTTCTGCAGAACCAAGTTTCAGAGCTTCAAATGCAGCTCGCTGTGGCCCAAGCTGAGATCCTCTGCATCCAGATGCAACATGAGCCTGCTGAGCCTGTAGCTGTGACGCAAAACCCAGAACTTGATGATTCCAATCCTCATCATCAGAGACAACAACCTTATTATCTCCAAAACGAGCAGTACCTTAACTTTGCATCTTCCAGCAATGTAATTCAGGACTCTCTTCAGAGAGAGAGCTTCTTTGGCCACGACATGGTTTCTTGA 522 0.4981 MGGTSPCASCKLLRRRCAKDCIFAPYFPSDDPQKFAIVHKVFGASNVGKMLQELPAHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSELQMQLAVAQAEILCIQMQHEPAEPVAVTQNPELDDSNPHHQRQQPYYLQNEQYLNFASSSNVIQDSLQRESFFGHDMVS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01371 173 Coils Coil 85 105 - -
Accr3g01371 173 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Accr3g01371 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 139 - -
Accr3g01371 173 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01371 Accr-Chr3 15467883 15468519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01371 3 116 AS2 family AT2G30130 90.351 6.13e-74 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Accr3g01371 LOB 2.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01371 - - gmx:121173085 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g01371 3 15467883 15468519 Accr3g01371 3 15467883 15468519 ECH