Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01370 ATGGACTCTGACTTTCCGAACAAAGCGTTAACGAAAACGCGATTTTCTGAGCTGAGCCCGCGACTTTCTGAACCTGTTCTCGAAGCTTTATCAGAGTCTGGCTTCGAGTTTTGCACTCCGGTTCAAGCCGCTACAATACCTTTGCTATGCAGTTTTAAGGACGTCGCCGTCGACGCCGCCACCGGTTCAGGCAAGACGCTGGCATTTGTCGTTCCACTTGTTGAGATTCTCCGCCGGTCCTGTTCCAATCCCAAGCCTCATCAGGTATTTGGAATAATTATATCTCCCACAAGGGAGCTGTCATCCCAAATATACCATGTTGCACAACCTTTCATTAAAACTTTAGCTAATGTTAAGTCCGTGCTCCTTGTTGGTGGAGTAGACGTAAAAGCAGATATGGAGAAAATTGAGGAAGGAGCTAATATATTGATTGGCACACCTGGGCGGCTATATGACATAATGGATCGTATGGATATATTGGATTTTAAAGGCCTTGAGATTTTAATTTTAGATGAGGCTGATAGGCTCCTGGATATGGGATTTCAGAAGCAGATTAATTCCATTATATCTCTCCTGCCAAAGCTTCGCAGAACAGGTCTATTCTCTGCTACTCAAACTGAGGCTGTTGAAGAGCTTTCTAAAGCTGGGCTGAGGAACCCTGTGAGGGTTGAAGTTCGGGCAGAGTCAAAATCAGTAAATGACCCTGCAGCATCACAGCAACCAACCTCTTCAAGGACGCCTGCAGGACTTCAAATTGAGTACATGGAATGTAGCGGTGAAAAGAAACCATCACAACTTGTTGATATCTTAGTGAAGAACCGCTCCAAAAAAATGATAATATATTTCATGACCTGTGCTTGTGTCGACTATTGGGGACTTGTCCTTCCACGCCTATCTGCTTTGAAAGGTTTCTCCTTGATCCCTCTTCATGGAAAGATGAAGCAGGCTGCTAGGGAGAAGGCATTGGCTTCTTTTACATCTCTTTCAAATGGAATACTTCTATGTACAGATGTTGCAGCACGTGGACTTGACATACCTGGAGTTGATTGTATAGTGCAGTATGATCCCCCACAAGATCCAAATGTTTTCATACATAGAGTTGGCCGAACTGCTCGTCTGGGTAAACAAGGACATGCTATTGTCTTCTTATTGCCAAAGGAAGAATCTTATGTGGAATTCCTGCGTGTAAGAAGAGTCCCCCTCCAAGAGAGAAGTTGCTCTAATGATGCATCTGATGTTGTTCCTGAGATTCGTTCCGCTGGAAAAAAAGATCGTGATGTAATGGAGAAAGGACTCAGGGCATTTGTTTCTTATATTCGTGCTTATAAAGAGCATCACTGCTCCTATATTTTTAGATGGAAAGAACTTGAAATTGGTAAGTTGGCCATGGGATATGGTTTACTGCAGCTTCCTTCAATGTCAGAGTTAAAACAGAAGTCATTTTCCACGGAAGGTTTTGTACCAGTTGAAGACATCAATTTGAAGGACATTAAGTACAGGGATAAATCTCGTGAAAAGCAAAGGAAGCAAAACCTGCAAGCAAAGAAAGAAGCCAAAGAGAAAGAGGCAAAGCCTCAGAAACCTAACAAAACCCCAAAAACCACCCCTGTAACAAGGAAGAAAACGGCTAAACAGAGACGTGCTCAGCAGTCAGTTGAAGATGAAGAAGAGCTTACACAAGAATATCGGCTGTGGAAAAAATTGAAAAAAGGAACTATAGATGAGGATGAGTATGCTAAATTAACAGGCACTGAAGAATTACTTTGA 1767 0.4273 MDSDFPNKALTKTRFSELSPRLSEPVLEALSESGFEFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRSCSNPKPHQVFGIIISPTRELSSQIYHVAQPFIKTLANVKSVLLVGGVDVKADMEKIEEGANILIGTPGRLYDIMDRMDILDFKGLEILILDEADRLLDMGFQKQINSIISLLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSVNDPAASQQPTSSRTPAGLQIEYMECSGEKKPSQLVDILVKNRSKKMIIYFMTCACVDYWGLVLPRLSALKGFSLIPLHGKMKQAAREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAIVFLLPKEESYVEFLRVRRVPLQERSCSNDASDVVPEIRSAGKKDRDVMEKGLRAFVSYIRAYKEHHCSYIFRWKELEIGKLAMGYGLLQLPSMSELKQKSFSTEGFVPVEDINLKDIKYRDKSREKQRKQNLQAKKEAKEKEAKPQKPNKTPKTTPVTRKKTAKQRRAQQSVEDEEELTQEYRLWKKLKKGTIDEDEYAKLTGTEELL 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01370 588 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 169 177 IPR000629 -
Accr3g01370 588 Pfam Domain of unknown function (DUF4217) 416 473 IPR025313 -
Accr3g01370 588 Pfam Helicase conserved C-terminal domain 262 374 IPR001650 -
Accr3g01370 588 Coils Coil 502 524 - -
Accr3g01370 588 SMART helicmild6 289 374 IPR001650 -
Accr3g01370 588 MobiDBLite consensus disorder prediction 500 558 - -
Accr3g01370 588 Pfam DEAD/DEAH box helicase 39 212 IPR011545 GO:0003676|GO:0005524
Accr3g01370 588 SMART ultradead3 34 233 IPR014001 -
Accr3g01370 588 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Accr3g01370 588 FunFam RNA helicase 9 226 - -
Accr3g01370 588 Gene3D - 3 226 IPR027417 -
Accr3g01370 588 Gene3D - 251 488 IPR027417 -
Accr3g01370 588 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 265 421 IPR001650 -
Accr3g01370 588 PANTHER RNA HELICASE 12 516 - -
Accr3g01370 588 CDD SF2_C_DEAD 250 383 - -
Accr3g01370 588 MobiDBLite consensus disorder prediction 232 246 - -
Accr3g01370 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
Accr3g01370 588 Coils Coil 584 588 - -
Accr3g01370 588 CDD DEADc_DDX55 26 223 - -
Accr3g01370 588 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 223 IPR014001 -
Accr3g01370 588 MobiDBLite consensus disorder prediction 500 528 - -
Accr3g01370 588 MobiDBLite consensus disorder prediction 227 246 - -
Accr3g01370 588 SMART DUF4217_3 412 475 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01370 Accr-Chr3 15458447 15462692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01370 17 388 Eukaryotic Initiation Factors Gene Family AT1G72730 30.027 9.39e-46 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01370 K14809 - gmx:100801482 958.362