Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01366 ATGTCGCACAATAAGAGGAAGTTATATCAATCAAAACATCCATTGGGATCTTACCCCTTTGAGGCATTTCTCTCTGGCTCATGGAAAGCTGTGGAACACATAAAAATTGAGGGAGGAACTCCAACCCTGCATTTTATCAATAATGAAAAAAGAGTTTTGAAGAGAAGTCCTGGTCCAGACATTCGGATAAGGTCGAGGAAAGCTACTCTATCAGATTGCTCCTGTTTTCTAAGACCTGGAATTGATGTATGTGTGTCATCAACCTCTCAACAGGATAATAGTTCAGGGAAAATTTGTCTTGAACCTGGATGGGTTGATGCTAAAATAAGATCTGTACAGAGAAAGGGCCACGTATCTGAGTGTTCATGTGAATACTTCGTCAACCTCTATGTTAATCAAGGTCGTTATGATCCAGAGAAGAGTGTTCTTAGTAAGGAGACTAAAGTTGTTGGAATAAATCAAATATCCATCCTCCAGAAGCTTGATCACAATCCCTGCGAAGATCAGCAATATCGGTGGGATTTGCCTGAGGATTGCTTTAAAGCACGAGAGACTAAACTGTTTGCAGGAAAATTCTTTTCTGATTTTTCATGGTTAGTTGTTGCATCAGCTTTAAAGCAGGTCTCATTCTGTGTAAGATCTGTAGAAGGCAAGATTGTGTATCAAATTTTGGGATGTGAACATTCTAGCTCTTCATTGAACTATACTTCTCTTAAACATGTAAATTTCAGATTAGACAATGGGATGCTATTACCCTTTGTTTCTCATGTCAATCCATCTGACAACAATAAGGCAGGCCAAGAGAAAGACGCATATGAAGATGAGATCTCACTAGGGTCTTGCATTGAGGGATTACGCCGTTCCAAACGTCGTAACATAGAACCTGAACGTTATCTTGGTTTTGATGATGTGTCCAAGTTGAATTTTGGTCATGTTCGAAATGATTTACCCAAGTCCAACACAAGATACGATGATTTGAAAGCTGATGTTGATATAATAGCAAATTGTCTAGGAAAGGACATAGATGCATGTCAAAATATTAAGAAGACAAATACCTGCCAGGAGGTCCTCGTGAACAACAGTTGGGCTGCAAGTGGGACAGCGAAGTCAGAAAATGTCGATGAAAAAGGTCATGAGGCTCAACTTGTTAGGGATTCTCTGCCTGATGGAGGTGGTCTAGTAGCACTTGACCAATCTTTTCTCAACAACGATGGTACAGGAAATTCTACACATGAAAATTATGTTTTTTCTGAATATAATCATCTGACTCATAGCCCTGAACTGAACAGGAAAATTGTCCATCCATGGGCATTTGAAGAAGTTGCTGATCATCATCAGTCAGTTGTTAGGGATTCTCTGCCTGATGGAGGTGGTCCAGTAGCCCTTGACCATTCTTTTCTCAGCACCAATATTACTGAAAATTCTAGGCATGAAAGTTGTGTTTTTTCTGAATATGATCATCTGATTCATAGCCCTGAACCGAACAGGAAAATTGTCGATCCATGGACATTTGAATCCTTTGGTAAATCTTCTGGATGTTATGTCCAGAAGAAAGATTTACCTGGTCTGCTGGACATGGATTCTGAAAATAGACAGGAAGGGGTACATTCTGATAAAGAAATTCAAGGGGAAAAATATCACCCACCATTGACCAGAAGTAAAACTCGTGCGCTAGAAATACCCTACAAAGATAGATCCTTAAGTGATGCTGAAAGTCCTGCAAAAGTGGTTGGTGATAAATCTTCTAGATGTTATACCTTTGGTACCTGCAATGTCCAGAAGAAGGATTTACCTGGTCTGCAGGACGTGGATTCTGAAAATAGACAGGAAGGGGTACATTCTGATAAAGAAATTCAAGGGAAAAAATATCACCCACCAATGACGAGAAGTAAAACTCGTGAGCTAGAAAGACCCTACAAACACAGATCCTTAAGTGATGCTGAAAATTCTGCAAAAGAGGTTGGTGATAAATCTTCTAGATGTTATAATTTTGGTACCTGTAATGTCCAGAAGAAGGATTTACCTGGTCTGCAGGACATGGATTCTGAAAATAGACAGGAAGGGGTACATTCTGATAAAGAAATTGAAGGGAAAAAACATCACCCACCAATGACAAGAAGTAAATCTCGTGAGCCAGAAAAACCCTACAAAGACAGATCCTTAAGTGATGCTGAAAATTCTGCAAAAAAGGTTGGTGATGAATCTTCTGGATGTTATAATTTTGGTACCTGTAATGTGCAGAGGAAGGATTTATCTGGTCTAGAGGACATGGATGCTGAAAATAGACAGGAAGGGATGCATTCCGAGAAAGAAATTCAAGGGAAAAAATATCACTCACCAATGACTAGAAGTAAAACTTGTGGGGAAGAGAAAACCTACAAAGACAGATCTTTAAGTGATGCTGAAAATTCTACAAAAGAGGTCGGTGATAAATCTTCTGGATGTTATTATTTTGGTACCTGTAATGTGCAGAGGAAGGATTTATCTGGTCTGGAGGACATGGATATTGAAAATAGATGGGAAGGGATATGTTCCAATAAAGAAATCCGAGGGAAAAAATATCATTCACCAATGAAAAGAAGTAAAAGTCATCGTGAAGAAAGAACATACAAAAACAGATCCTCAAGTGATGCTGCCTACAAGGAATTGATAGATTCGTACTTAAAGAATGTTGACACAACACTAAGTAAGGAGGAGCCGCCTATAACCGACCAGTGGGTAGAATTTAAGACGACAAGTGACTATGGGCAAAACGAGGGAGCAGAAGCTGATGCAGAAGTTTCTGAAATTGATATGTTGTGGAAAGAAATGGAAATTGCATTAGCTTCATTTTATGTTTTTGATAACGGAGAGGGTTCAAAGGCTGTAGTCTCTTCAGAGACTGAGGAAAATTCTGACAAACTTTGTCAACACGAGTTTAGATTGAATGAAGAAATTGGGATTTACTGCTGTAGATGTGGCTTTGTGAAGACAGAAATAAAAGACATTTCACCACCCTTTGCGCAGAACTTGCGATGGCAACAGGATGAAAAGCAGTGTGATGCTGGAAATTCGGAGGCAAAGGCCTATAAGAATGATAGTTCACATCTTTTGTCAGATCACACTTCAACCAATATGCCTGCATCTGAAGAAAATGATATCTGGGGACTGATCCCCAAACTTACTAGTAAGTTGCATGGCCACCAGAAAAAAGCTTTTGAATTTCTTTGGAAAAATATTTCTGGATCTGTGCAACCGGCATATATGAGAGCTGCATCTAAAAGAATAGGTGGCTGTGTGATATCTCATTCACCTGGAGCTGGAAAAACTTTCCTGATTATTGCATTTCTCGCGAGCTACTTGAAGTTGTTCCCAGGAAAAAGGCCTTTGGTCCTTGCTCCAAAGACAACACTTTATACATGGTATAAAGAATTTATCAAATGGGAAATTCCTATACCAGTGTATCTGATCCAATCTCGACGTAAACTTCAAGTGTGCAAGGAGAAGCCATTGGTTATTCCTGGTGTTCCAAAGCCGACTGTAGATGTCAGGCATCTTTTGGACTCTCTGGAAAAAATACAGAAGTGGCATTCGCACCCCAGTGTTCTAGTCATGAGTTATAGTTACTTTTTGAGGCTGATGGAAGATAATTCAAAGTTTTCGCACCGAAAGCATATGGCTGAAGTTTTGAGGAAAAGTCCAGGGGTTCTTGTTCTAGATGAAGGGCACAATCCTAGAAGTACAGAATCATGTTTGAGAAAAGCCTTAATGAAAGTAGAGACAGATTTGAGAATACTACTTTCAGGTACATTGTTCCAGAACAATTTCTGTGAGTACTTCAACACTCTCTGCCTGGCAAGACCAAGATTTATTCATGAAGTTCTGAGAGAATTAGACCCCGAATGCAAGGGGGATGAAGGTAGAGCTGGAAAAAAACCAAACTTCATGGAAAGACGGGCAAGAAGATTCTTCTTAGATAAAATTGCAAAAAAAATAGACTCTGACGATAATAATGATGAGAGGCTGCAGGGTCTAAACATGTTAAGAAAGATAACAAATGGGTTTATAGATGTTTATGATGGTGGTAGTTATGATAATCTTCCTGGTTTGCATGTTTATACATTGTTAGTGAATATTACTGATTTTCAAGGACAGATTTTTGGGGCACTCTATGAAAAAGTATCTGACTCTAATCGATATCCTCTGGAGGTGGAGCTTTTGGTAACCCTTGGAGCAATACATCCATGGCTAATCAAAACAGCTGCATTCTCTGATAAGTTTTTAACTGAAGCTCAACTGAGTGAGCTGGAAAGATGCAAGTTTGATTTGAAGATAGGACCAAAAGTAAGGTTTGTTTTGAGCCTTGTGTATCGTGTTGTCAAGGAGGAAAAGATTCTTGTCTTCTTCCACTACATTGCACCTATGAGATTGTTCGTAGAATTATTCGAGAAGTTCTTTGGATGGCAGAGTGGTCGTGAAGTTTTGGTACTTAGTGGGGAACAAGATCTCTTTGAACGTGGAAGAGTGATTGATAAGTTTGAGGAGCCTAGAGGAGCATCAAAGATACTCCTTGCTTCAATTACAGCCTGCTCTGAAGGAATTAGTCTGACCGCGGCTTCTCGCGTGATTTTGTTGGAATCAGAGTGGAATCCATCAAGGACAAGGCAAGCCATTGCACGTGCCTTTCGCCCCGGTCAGCAGAGGATTGTGTATGTGTATCAGCTTCTGTTGACAGGCACGATGGAGGAAGACAAGTTCCGCAAAACCACTCGGAAAGAGCGAGTTTCAAGGATGATTTTTAGTGAGGATTTTGTGGAGGGTCATTCCCAATGGCAAGCAGAAAAGCTCGAAGACGATATCCTTCGAGAAATGATCGCAGAAGACAAGTCCAAAATATTCCATATGGTAATGAAAGATGAGAAGGCTTCAACCAATTGA 4917 0.3982 MSHNKRKLYQSKHPLGSYPFEAFLSGSWKAVEHIKIEGGTPTLHFINNEKRVLKRSPGPDIRIRSRKATLSDCSCFLRPGIDVCVSSTSQQDNSSGKICLEPGWVDAKIRSVQRKGHVSECSCEYFVNLYVNQGRYDPEKSVLSKETKVVGINQISILQKLDHNPCEDQQYRWDLPEDCFKARETKLFAGKFFSDFSWLVVASALKQVSFCVRSVEGKIVYQILGCEHSSSSLNYTSLKHVNFRLDNGMLLPFVSHVNPSDNNKAGQEKDAYEDEISLGSCIEGLRRSKRRNIEPERYLGFDDVSKLNFGHVRNDLPKSNTRYDDLKADVDIIANCLGKDIDACQNIKKTNTCQEVLVNNSWAASGTAKSENVDEKGHEAQLVRDSLPDGGGLVALDQSFLNNDGTGNSTHENYVFSEYNHLTHSPELNRKIVHPWAFEEVADHHQSVVRDSLPDGGGPVALDHSFLSTNITENSRHESCVFSEYDHLIHSPEPNRKIVDPWTFESFGKSSGCYVQKKDLPGLLDMDSENRQEGVHSDKEIQGEKYHPPLTRSKTRALEIPYKDRSLSDAESPAKVVGDKSSRCYTFGTCNVQKKDLPGLQDVDSENRQEGVHSDKEIQGKKYHPPMTRSKTRELERPYKHRSLSDAENSAKEVGDKSSRCYNFGTCNVQKKDLPGLQDMDSENRQEGVHSDKEIEGKKHHPPMTRSKSREPEKPYKDRSLSDAENSAKKVGDESSGCYNFGTCNVQRKDLSGLEDMDAENRQEGMHSEKEIQGKKYHSPMTRSKTCGEEKTYKDRSLSDAENSTKEVGDKSSGCYYFGTCNVQRKDLSGLEDMDIENRWEGICSNKEIRGKKYHSPMKRSKSHREERTYKNRSSSDAAYKELIDSYLKNVDTTLSKEEPPITDQWVEFKTTSDYGQNEGAEADAEVSEIDMLWKEMEIALASFYVFDNGEGSKAVVSSETEENSDKLCQHEFRLNEEIGIYCCRCGFVKTEIKDISPPFAQNLRWQQDEKQCDAGNSEAKAYKNDSSHLLSDHTSTNMPASEENDIWGLIPKLTSKLHGHQKKAFEFLWKNISGSVQPAYMRAASKRIGGCVISHSPGAGKTFLIIAFLASYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVYLIQSRRKLQVCKEKPLVIPGVPKPTVDVRHLLDSLEKIQKWHSHPSVLVMSYSYFLRLMEDNSKFSHRKHMAEVLRKSPGVLVLDEGHNPRSTESCLRKALMKVETDLRILLSGTLFQNNFCEYFNTLCLARPRFIHEVLRELDPECKGDEGRAGKKPNFMERRARRFFLDKIAKKIDSDDNNDERLQGLNMLRKITNGFIDVYDGGSYDNLPGLHVYTLLVNITDFQGQIFGALYEKVSDSNRYPLEVELLVTLGAIHPWLIKTAAFSDKFLTEAQLSELERCKFDLKIGPKVRFVLSLVYRVVKEEKILVFFHYIAPMRLFVELFEKFFGWQSGREVLVLSGEQDLFERGRVIDKFEEPRGASKILLASITACSEGISLTAASRVILLESEWNPSRTRQAIARAFRPGQQRIVYVYQLLLTGTMEEDKFRKTTRKERVSRMIFSEDFVEGHSQWQAEKLEDDILREMIAEDKSKIFHMVMKDEKASTN 1638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01366 1638 MobiDBLite consensus disorder prediction 760 810 - -
Accr3g01366 1638 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 613 1637 IPR044567 GO:0080188
Accr3g01366 1638 SMART ultradead3 1054 1287 IPR014001 -
Accr3g01366 1638 MobiDBLite consensus disorder prediction 860 875 - -
Accr3g01366 1638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1358 1623 IPR027417 -
Accr3g01366 1638 CDD DEXHc_ATRX-like 1058 1289 - -
Accr3g01366 1638 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1445 1609 IPR001650 -
Accr3g01366 1638 SMART helicmild6 1469 1558 IPR001650 -
Accr3g01366 1638 MobiDBLite consensus disorder prediction 760 807 - -
Accr3g01366 1638 Pfam SNF2-related domain 1068 1283 IPR000330 GO:0005524|GO:0140658
Accr3g01366 1638 MobiDBLite consensus disorder prediction 672 734 - -
Accr3g01366 1638 MobiDBLite consensus disorder prediction 596 657 - -
Accr3g01366 1638 Gene3D - 1361 1638 IPR027417 -
Accr3g01366 1638 MobiDBLite consensus disorder prediction 676 730 - -
Accr3g01366 1638 MobiDBLite consensus disorder prediction 853 875 - -
Accr3g01366 1638 Pfam Helicase conserved C-terminal domain 1442 1557 IPR001650 -
Accr3g01366 1638 MobiDBLite consensus disorder prediction 599 655 - -
Accr3g01366 1638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1050 1284 IPR027417 -
Accr3g01366 1638 MobiDBLite consensus disorder prediction 530 557 - -
Accr3g01366 1638 Gene3D - 1026 1307 IPR038718 -
Accr3g01366 1638 CDD SF2_C_SNF 1433 1569 - -
Accr3g01366 1638 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1083 1282 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01366 Accr-Chr3 15418598 15424680 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01366 1456 1588 RAD5 or RAD16-like Gene Family AT5G43530 35.338 4.95e-12 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr3g01366 SNF2_N 1.3e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01366 K10875 - qsa:O6P43_013801 1107.05