Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01297 ATGTCTTCGGAGGAAATTGGTCTTGCTCCAGATCAGAGGATCGATAACGGTCTCAATTCATCACTGGTGTTCCAAGAAGACCCCTTGCGTTACAGCTGCGGTGCTCCACAACGTCGGGTCGGGGACCCAGGTTCGAAAACGAGGGAGCTTGTCGGTTTCATTGATGAAAAGATGTTCGCTGTGGACCGTGACCGTTTTTTCGCGGCTCGGGGATTGGAGTTCCGTCGTAATGTTTTGGGGAATTGCTCGGACCAGCGGAACCCACCGGATGCCCGGAATTGGAATGGGAACGGGAGCACTGCAACCCCGAGCGGCGATGAATCGGACGGCGAGGATGATGAAGACGATGAGGAAGATGACGACGACGACGATGTTGAGGGCGGCGCTGAAGTGGAAAGACTAGTTGGTGTTAACGATGCTAGCCAAGGGAATTCCAATCCCAATTCAATAAACGATATTAACATTAACAGCATAAGTGGTGGTAACCTTGCTAATGCTGCAGATGGAATATCGAACGGAAAAACTCAGCATCATTCGTCATACGGATCGAGTAGAGAGGTATTGGTGAAGGATGGAGAAATTGGGCCGACGCAGAATAATTCAGGGGGTAACGACGAAGATCATCAGCAAGAAAGGTTAGTTAAATCGCAGAGTGCGGTCACGATTGCCGAAACTGATTGTGAGGAGTATTATTCACACTATCTTCAAGGCGCGGAGGGCTCGGCTTCTGTGCAGAAAGCTATAGCAGTGGAAAATGATTGCGGGTTTAGCGGAAGAAAGGAAGTTATCTATTCAAGCGAGTCAGTCGAATCATTGAGGACAGTGCTTTCAGATCCTATAACGGGAGCTCTTATGGATGATGCAATGATATTGCCTTGTGGACATTCCTTTGGTGGAGGAGGAATACAGCATGTTATTAGAATGAAAGCTTGTTCCTCTTGTTCCCAACCCATATCTGAGGAATCGATATCTCCAAATCTATCGCTTAGAGTTGCTGTGCAGGCATACCGTAGGGAAGAGGAGTCACAGTTTTACCGGTCATCAAAAAGAAGAAGGGAAAGATTTGATCAGGGTGGTTATGGTGATTCAACAGTTATGGAACAACCAAGATGCAAAGGTGTTCAATTTCCATTTGCTGTGATGGACCGGGTTATCATAAAGGGGAACAAAAGGACGCCACAGCGTTTTGTTGGGAGGGAAGCTATTGTGACAACACAATGCCTAAATGGATGGTATGTGGTAAAGACATTGGACAATGCGGAGAGCGTTAAATTGCAGTATCGCTCGCTTGCTAAGGTTTCAGGTGACCCTTCAAAACCAGCCTCCAGCAAGAATGAGCTGACAGACTTTGTTAACATGGAAGCCTTCCTTAGAGATTGTATTGATCTTGTTACACTTCTATTGAATATTTATACGTCCACAGCTATACGGTTGGCTATCAATTATGTGAGATTGAATTACAAAAATCTCTGTATCTCTCCCTCCCAGTGTTGA 1494 0.4632 MSSEEIGLAPDQRIDNGLNSSLVFQEDPLRYSCGAPQRRVGDPGSKTRELVGFIDEKMFAVDRDRFFAARGLEFRRNVLGNCSDQRNPPDARNWNGNGSTATPSGDESDGEDDEDDEEDDDDDDVEGGAEVERLVGVNDASQGNSNPNSINDININSISGGNLANAADGISNGKTQHHSSYGSSREVLVKDGEIGPTQNNSGGNDEDHQQERLVKSQSAVTIAETDCEEYYSHYLQGAEGSASVQKAIAVENDCGFSGRKEVIYSSESVESLRTVLSDPITGALMDDAMILPCGHSFGGGGIQHVIRMKACSSCSQPISEESISPNLSLRVAVQAYRREEESQFYRSSKRRRERFDQGGYGDSTVMEQPRCKGVQFPFAVMDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVSGDPSKPASSKNELTDFVNMEAFLRDCIDLVTLLLNIYTSTAIRLAINYVRLNYKNLCISPSQC 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01297 497 MobiDBLite consensus disorder prediction 192 217 - -
Accr3g01297 497 MobiDBLite consensus disorder prediction 1 20 - -
Accr3g01297 497 ProSiteProfiles U-box domain profile. 271 343 IPR003613 GO:0004842|GO:0016567
Accr3g01297 497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 341 IPR013083 -
Accr3g01297 497 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 2 446 - -
Accr3g01297 497 MobiDBLite consensus disorder prediction 80 105 - -
Accr3g01297 497 MobiDBLite consensus disorder prediction 106 126 - -
Accr3g01297 497 SUPERFAMILY RING/U-box 267 342 - -
Accr3g01297 497 MobiDBLite consensus disorder prediction 80 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01297 Accr-Chr3 14648852 14653417 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01297 216 451 Plant U-box Gene Family AT5G05230 58.264 1.02e-87 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01297 - - pcin:129302449 696.812