Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01296 ATGCCGTCGGTTTTGAATATGAAAGCTCTTTCCTACTTGTTCCTGTTGCTTCTTATAGATCCGGGGTTGGTGGTGATTTCTGTGAACCCATCCCTGAATGACGACGTCCTAGGTCTGATAGTATTCAAAGCTGACATAAAAGATCCGAAGGGGAAACTGGTAAACTGGAATGAAGATGATGAGACTTGCTGTGGTTGGGTCGGTGTGAAATGCAACCCTAGATCCAACAGAGTCATTGAGCTTAACCTTGATGGGTTATCTCTTTCGGGTCGGATTGGTCGAGGCCTCTTCCAGTTGCAATTTCTGCGCAAACTTTCTCTGGCGAAGAACAATCTCACCGGCAGCGTAAGTCCCAACATTGCTCGGCTTGACAACCTTCGAGTGATCGATTTGAGCGATAACAATCTCTCTGGCGAGATTCCTGATGATATTTTCCGGCAATGTGGGTCTCTAAGGGCCATTTCATTAGCGAGAAACAAGTTTACGGGGAAGATTCCCACTAGCTTGAGCTCATGTTCAACTCTTGCTGCAATTGACCTCTCGTTTAACCAGTTTTCGGGTCCTATTCCTTCTGGTATCTGGACTTTGAGTGGACTAAGGTCACTGGTTTTGTCGGATAATTTGCTGGAAGGTGAGATTCCAAAGACCACTGAAGGATTGAAGAATTTGCGAACAATCAACTTGGCCAGAAATCAGTTGTCTGGGAAGATCCCTGATGGGTTTGGAAGTTGCTTGCTTTTGAGGTCTATTGATCTCAGTGAGAATTCTCTTTCTGGTAGCCTTCCGGACGATATGAAGCAGCTCACATTGTGTAGTTATCTTAGTGTGAGTGGAAATGCTTTTTCAGGTGAGATTCCTGAATGGATTGGGGAAATGAAAAGCCTGGAGGCACTAGACGTTTCTCTGAATCGATTTTCAGGTATGGTGCCAAGCTCTATAGGAAATCTTCAGTCATTGAAGGCAATGAATTTTTCTGGAAATGGTTTTTCTGGTAACCTGCCAGAGTCTATGATAAATTGCACAAACCTTTTAGCCTTGGATGTTAGTCAGAATTCAATGTCTGGAGATCTTCCCTCGTGGATTTTTAAGTCAGATTTGCAGAAAGTTTTGGTATCAGAAAAGAAATTGCGTGGAGGTCTGAAAAATTCTCTATATTCCTTAGAGGCAGTTGCTGTTCAAAGTCTTAAAGTTTTGGATTTATCTGACAATGCATTTTCTGGAGAAATCACATCTGATATCTCAGTCCTAAGCAGCTTGAAGCTCTTGAATTTATCAAAGAACACTCTGAGTGGTCCTATACCAGATGCAATTGGAGAATTGAAGTCCCTGAATAGTCTTGATTTGAGTGAGAACTGGCTAAATGGAAGCATACCTATGGAAATAGGAGGAGCTGTATCTTTGAAAGAACTGAGATTGAGGAAAAACCATCTAGCGGGAGGCATTCCAACCTCAATTGGCAACTGCACATCTTTGTCGACTTTAATTCTATCACAGAACAGCTTGACTGGGTCAATACCTACAGTAATTGCAAAGCTGACTAATTTACAAGTTGTTGACTTGTCTTTGAACAATTTTACTGGAACCATTCCCAAGCAATTGGCCAATCTGCCCAATCTTCTTTCCTTTAATATATCTCATAACAACCTAAAGGGCGAACTGCCAGCCGGCTCCTTTTTCAATACCATTTCACCTTCCTATCTTACCGGTAATCCATCTCTTTGTGGTGCTGCTGTCAAGAAATCATGCCCTTCTGTCCTTCCAAAGCCTATTGTCCTAAATCCAAACACCACCTCTTCTGATTATACTCCAGGGTCATTAACTCCCAATGTTGGTCACAAAAGAATCATTCTCAGCATTTCTGCACTCATTGCCATTGGTGCAGCTGTTGTCATTGTAATTGGGGTCATTGCCATCACTGTTCTTAATCTCCGTGTTCGGTCCTCTGCGTCTAATGCTCCGGCTGCCCTCACATTTTCTGCAGGGGAAGAATTTAGCCATTCCCCAACTACAGATGCCAACTCTGGCAAGCTTGTTATGTTTTCAGGTGAACCAGACTTTAGCACAGGGGCGCATGCTTTGCTTAACAAGGATTGTGAACTTGGGCGTGGCGGGTTTGGAGCAGTATACCAAACTGTTCTTAGAGATGGTCATGCAGTTGCAATCAAGAAGCTCACTGTGTCAAGTCTTGTCAAGTCTCAGGAAGATTTTGAAAGAGAAGTGAAGAAATTAGGAAAAGTTAGACACCAAAATCTTGTGGCACTTGAAGGTTACTATTGGACCCCATCCCTACAGCTCCTCATATACGAGTTTGTTTCTGGTGGCAGTCTGTACAAGCATCTCCATGATGGATCAGGTGGAAATTTCCTCTCTTGGAATGAGAGGTTTAATATAATTCTTGGCACAGCTAAGGCCTTGGCTCATTTGCATCACATGAACATTATCCACTACAACATCAAGTCCACTAATGTCCTAATGGATGGCTATGGGGAAGCTAAAGTGGGTGACTTCGGCCTAGCAAGATTACTGCCGATGCTTGACCGTTATGTTCTGAGCAGCAAAATTCAAAGCGCTCTTGGCTACATGGCACCAGAATTTGCCTGCCGTACTGTGAAGATAACAGAGAAATGTGATGTATATGGATTTGGAGTTTTGGTCTTGGAAGTGGTCACAGGGAAGAGGCCAGTTGAATACATGGAGGACGATGTGGTGGTGCTCTGTGACATGGTCAGAGGGGCTTTGGAAGAAGGAAGGGTAGAAGAATGTATCGACACAAGGCTGCAGGGAAAGTTCCCGGCCGAAGAAGCCATTCCTGTGATGAAACTAGGCTTAATATGCACTTCACAGGTGCCCTCGAACCGACCAGACATGGGAGAGGTAGTCAACATATTGGAGCTAATTAGATGTCCCTCAGAAGGACAAGAGGAGCTTGGATGA 2934 0.4383 MPSVLNMKALSYLFLLLLIDPGLVVISVNPSLNDDVLGLIVFKADIKDPKGKLVNWNEDDETCCGWVGVKCNPRSNRVIELNLDGLSLSGRIGRGLFQLQFLRKLSLAKNNLTGSVSPNIARLDNLRVIDLSDNNLSGEIPDDIFRQCGSLRAISLARNKFTGKIPTSLSSCSTLAAIDLSFNQFSGPIPSGIWTLSGLRSLVLSDNLLEGEIPKTTEGLKNLRTINLARNQLSGKIPDGFGSCLLLRSIDLSENSLSGSLPDDMKQLTLCSYLSVSGNAFSGEIPEWIGEMKSLEALDVSLNRFSGMVPSSIGNLQSLKAMNFSGNGFSGNLPESMINCTNLLALDVSQNSMSGDLPSWIFKSDLQKVLVSEKKLRGGLKNSLYSLEAVAVQSLKVLDLSDNAFSGEITSDISVLSSLKLLNLSKNTLSGPIPDAIGELKSLNSLDLSENWLNGSIPMEIGGAVSLKELRLRKNHLAGGIPTSIGNCTSLSTLILSQNSLTGSIPTVIAKLTNLQVVDLSLNNFTGTIPKQLANLPNLLSFNISHNNLKGELPAGSFFNTISPSYLTGNPSLCGAAVKKSCPSVLPKPIVLNPNTTSSDYTPGSLTPNVGHKRIILSISALIAIGAAVVIVIGVIAITVLNLRVRSSASNAPAALTFSAGEEFSHSPTTDANSGKLVMFSGEPDFSTGAHALLNKDCELGRGGFGAVYQTVLRDGHAVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKHLHDGSGGNFLSWNERFNIILGTAKALAHLHHMNIIHYNIKSTNVLMDGYGEAKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRGALEEGRVEECIDTRLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSEGQEELG 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01296 977 CDD STKc_IRAK 700 966 - -
Accr3g01296 977 SUPERFAMILY L domain-like 48 374 - -
Accr3g01296 977 Pfam Protein tyrosine and serine/threonine kinase 696 962 IPR001245 GO:0004672|GO:0006468
Accr3g01296 977 SUPERFAMILY Protein kinase-like (PK-like) 698 961 IPR011009 -
Accr3g01296 977 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 688 770 - -
Accr3g01296 977 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Accr3g01296 977 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 270 388 - -
Accr3g01296 977 Gene3D Ribonuclease Inhibitor 311 586 IPR032675 -
Accr3g01296 977 SUPERFAMILY RNI-like 262 573 - -
Accr3g01296 977 Gene3D Phosphorylase Kinase; domain 1 687 770 - -
Accr3g01296 977 ProSiteProfiles Protein kinase domain profile. 694 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr3g01296 977 Gene3D Transferase(Phosphotransferase) domain 1 771 975 - -
Accr3g01296 977 ProSiteProfiles Leucine-rich repeat profile. 125 147 IPR001611 GO:0005515
Accr3g01296 977 ProSitePatterns Protein kinases ATP-binding region signature. 700 723 IPR017441 GO:0005524
Accr3g01296 977 Pfam Leucine rich repeat 125 185 IPR001611 GO:0005515
Accr3g01296 977 Pfam Leucine rich repeat 466 524 IPR001611 GO:0005515
Accr3g01296 977 Pfam Leucine rich repeat 198 257 IPR001611 GO:0005515
Accr3g01296 977 Pfam Leucine rich repeat 394 451 IPR001611 GO:0005515
Accr3g01296 977 SMART LRR_typ_2 196 219 IPR003591 -
Accr3g01296 977 SMART LRR_typ_2 123 147 IPR003591 -
Accr3g01296 977 SMART LRR_typ_2 536 560 IPR003591 -
Accr3g01296 977 SMART LRR_typ_2 292 315 IPR003591 -
Accr3g01296 977 SMART LRR_typ_2 416 440 IPR003591 -
Accr3g01296 977 SMART LRR_typ_2 220 244 IPR003591 -
Accr3g01296 977 SMART LRR_typ_2 512 535 IPR003591 -
Accr3g01296 977 PRINTS Leucine-rich repeat signature 416 429 - -
Accr3g01296 977 PRINTS Leucine-rich repeat signature 247 260 - -
Accr3g01296 977 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 771 972 - -
Accr3g01296 977 Gene3D Ribonuclease Inhibitor 33 310 IPR032675 -
Accr3g01296 977 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 33 311 - -
Accr3g01296 977 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 312 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01296 Accr-Chr3 14636442 14639888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01296 8 977 Receptor kinase-like Gene Family AT3G56370 68.345 0.0 1287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Accr3g01296 PK_Tyr_Ser-Thr 4.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01296 - - qsa:O6P43_014848 1505.73