LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr3g01276	ATGGTGCAGGCAGCAAGGTGCTACAGGCAAATTAAAAACAAACCATACCCGAAATCACGCTTCTGCTGTGGTGTTCATCCTGATCCCAAGATCAGAATTTATGATGTTGGGATGAAAAAGAAAGGTGGTGATGAGTTTTCTTTCTGTGTCCATCTTGTTAGCTGGGAGAAAGAAAATGTTTCGAGTCAGGCACTGGAAGCTGCTAGGATTGCATGCAACAAACATATGGCTAAAATTGCTGGAAAGGATGCATTCCACTTGAGGGTTAGGGTACATCCATTCCATGTTCTTAGGATTAACAAGATGCTTTCATGTGCTGGAGCTGAGAGGCTCCAAACAGGGATGAGAGGTGCATTTGGAAAGCCCCAAGGAACTTGTGCTAGAGTGGCTATTGGACAGGTCCTCCTTTCTGTTCGCTGCAAGGACGCCAACAAGAATCATGCTCAGGAAGCCCTCCGTCATGCCAAGTTCAAGTTCCCTGGCTGCCAAAAGATCACTGTCAGCAGAAAATGGGGCTTCACCAAGTTTAGCCGTGCTGACTATGTGAAGTTGAAGTCAGGGGGCAGAATCACGCCTGATGGTGTAAATGCCAAGCCTGGAAGAGTCTTTCTGCACGCAGCTGCTTAG	627	0.4721	MVQAARCYRQIKNKPYPKSRFCCGVHPDPKIRIYDVGMKKKGGDEFSFCVHLVSWEKENVSSQALEAARIACNKHMAKIAGKDAFHLRVRVHPFHVLRINKMLSCAGAERLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDANKNHAQEALRHAKFKFPGCQKITVSRKWGFTKFSRADYVKLKSGGRITPDGVNAKPGRVFLHAAA	208

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr3g01276	208	CDD	Ribosomal_L16_L10e	41	165	IPR016180	GO:0003735\|GO:0005840\|GO:0006412
	Accr3g01276	208	PIRSF	RPL10a_RPL10e	1	182	IPR001197	GO:0003735\|GO:0005840\|GO:0006412
	Accr3g01276	208	Gene3D	Ribosomal protein L10e/L16	2	204	IPR036920	GO:0003735\|GO:0005840\|GO:0006412
	Accr3g01276	208	PANTHER	60S RIBOSOMAL PROTEIN L10	3	198	IPR001197	GO:0003735\|GO:0005840\|GO:0006412
	Accr3g01276	208	FunFam	60S ribosomal protein L10	1	199	-	-
	Accr3g01276	208	Pfam	Ribosomal protein L16p/L10e	11	165	IPR016180	GO:0003735\|GO:0005840\|GO:0006412
	Accr3g01276	208	SUPERFAMILY	Ribosomal protein L16p/L10e	5	173	IPR036920	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr3g01276	Accr-Chr3	14417730	14419016	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr3g01276	5	208	Cytoplasmic Ribosomal Protein Gene Family	AT1G66580	77.778	7.60e-119	335

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr3g01276	K02866		-	cit:102625379	362.073