Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01275 ATGTTTTTGCGCCTCGCAAACGCTAACCGCTCGTCCAGACGTTCGCCATGGGGAGGAGCAGCAAGGTGCTACAGGCAAATTAAAAACAAACCATACCCGAAATCACGCTTCTGCTGTGGTGTTCATCCTGATCCCAAGATCAGAATTTATGATGTTGGGATGAAAAAGAAAGGTGGTGATGAGTTTTCTTTCTGTGTCCATCTTGTTAGCTGGGAGAAAGAAAATGTTTCGAGTCAGGCACTGGAAGCTGCTAGGATTGCATGCAACAAACATATGGCTAAAATTGCTGGAAAGGATGCATTCCACTTGAGGGTTAGGGTACATCCATTCCATGTTCTTAGGATTAACAAGATGCTTTCATGTGCTGGAGCTGAGAGGCTCCAAACAGGGATGAGAGGTGCATTTGGAAAGCCCCAAGGAACTTGTGCTAGAGTGGCTATTGGACAGGTCCTCCTTTCTGTTCGCTGCAAGGACGCCAACAAGAATCATGCTCAGGAAGCCCTCCGTCATGCCAAGTTCAAGTTCCCTGGCTGCCAAAAGATCACTGTCAGCAGAAAATGGGGCTTCACCAAGTTTAGCCGTGCTGACTATGTGAAGTTGAAGTCAGGGGGCAGAATCACGCCTGATGGTGTAAATGCCAAGCCTGGAAGAGTCTTTCTGCACGCAGCTGCTTAG 675 0.48 MFLRLANANRSSRRSPWGGAARCYRQIKNKPYPKSRFCCGVHPDPKIRIYDVGMKKKGGDEFSFCVHLVSWEKENVSSQALEAARIACNKHMAKIAGKDAFHLRVRVHPFHVLRINKMLSCAGAERLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDANKNHAQEALRHAKFKFPGCQKITVSRKWGFTKFSRADYVKLKSGGRITPDGVNAKPGRVFLHAAA 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01275 224 PANTHER 60S RIBOSOMAL PROTEIN L10 21 214 IPR001197 GO:0003735|GO:0005840|GO:0006412
Accr3g01275 224 Pfam Ribosomal protein L16p/L10e 27 181 IPR016180 GO:0003735|GO:0005840|GO:0006412
Accr3g01275 224 SUPERFAMILY Ribosomal protein L16p/L10e 21 189 IPR036920 GO:0003735|GO:0005840|GO:0006412
Accr3g01275 224 CDD Ribosomal_L16_L10e 57 181 IPR016180 GO:0003735|GO:0005840|GO:0006412
Accr3g01275 224 Gene3D Ribosomal protein L10e/L16 19 220 IPR036920 GO:0003735|GO:0005840|GO:0006412
Accr3g01275 224 FunFam 60S ribosomal protein L10 17 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01275 Accr-Chr3 14417730 14420119 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01275 21 224 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 77.778 2.22e-118 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01275 K02866 - cpap:110823731 362.073