Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01274 ATGGGAACATCAGGGCTTGATGATGCAGATCAAAGCTCCATTTCTTCGTCATCATCTTCTGCTGGAGTTGTAAATACGACTGAAGGTAACAACACTGGCAGTGTTGGAATTGGAACTTGGTATGGGGTGCGGTTGCCTTCTCCACTCTCTTTTTTACTGGATTACTCTGGCCGTCTCCGCTCAAGGTCCTCAGTCGTCCATTCTGAGCCTATAATAGACAACAACGAAGCTATGGCCTATGAAATACGACATCATCGTCAAACTTCTTCCTTAGATTCTACTGCTGTCACCATTTGCAGTGGTCGCAGTGACAGCAGTTCAGGGGAAGTTGCCATACGAATTAGTGGACGGAATCACAATGCTGGGTTGAGTTCAGTTTCTTCAGCGTCCCTAAATCTGTCTGTAGACGATGATTTGATGGTAAATAAGGGTGGAATGCCTGTTTCGGATGAGGATGCTGAGAGTAGCAGTGGGATTATGGCTAGTGAGAGAGCTCCTCTAGCGTCCGCATCATCATCTAGTAATATTAGTGGGCAGGGTGATGTTAGTGCTGTGAATGGCTTGGAAGGTAACATTCGGGGTTTATCATCTCAAGAAAGTAATGATTTTCGGCAACTTGCTAAATGGCTTGAGCAGGTTCTTCCTTTCTCGCTGTTGTTGTTGGTTTTGTTCATTCGCCAGCATTTGCAAGGTTTCTTCGTTACAATTTGGGTTTCAATTGTGATGTTCAAGTCAAATGAAATGGTTAAGAAGCAGACAGCTTTAAAGGGAGATAGGAAAGTCTCAGTTCTCCTCAGTATCTCACTTGTCTTCTTGCTTCATGTGATTTGCATTTACTGGTGGTATCAAGATGATGATCTTTTATACTCACCACTCATCTTGCTTCCTCCAAAAGCAACACCTCATTTCTGGCATGCAATATTCGTCGTTCTGATTAATGATGTACTTGTGCGGCAAGCAGCAATGTCTTTCAAGTGCTTGCTACTTATATATTTCAAAAATGACAGAGGTCACAGCTTCCGTCTGCAGGCTCAAATATTAACTCTGGTCGAGCACACACTGCTGCTGTACCGTACCTTGTTACCAACACCTGTTTGGTACCGATTTTTCCTAAACAGGGAATACGGAAGTCTCTTTTCATCACTGACCACAGGGCTGTACCTAACCTTTAAGCTAACATCTTCTGTTGAGAAGGTCCAACGCTTCTTTTCTGCCTTAAAAGCATTATGGGGCAAGGATATTCTCTATGGCGTTTATGCTACAAAGGAACAGGTAAATGCTGCAGGTGACCTTTGTGCTATATGCCAGGAGAAGATGTGCGGTCCTATCCTGTTACGCTGTAAACACATTTTCTGTGAGGAGTGTGTATCAGAATGGTTTGACAGAGAAAGAACTTGCCCACTATGTAGGGCATTGGTGAAGGCTGGTGATATTCGGTCTTTTGGGGATGGATCAACAAGTCTGTTTTTCCAGCTATGTTAA 1482 0.4366 MGTSGLDDADQSSISSSSSSAGVVNTTEGNNTGSVGIGTWYGVRLPSPLSFLLDYSGRLRSRSSVVHSEPIIDNNEAMAYEIRHHRQTSSLDSTAVTICSGRSDSSSGEVAIRISGRNHNAGLSSVSSASLNLSVDDDLMVNKGGMPVSDEDAESSSGIMASERAPLASASSSSNISGQGDVSAVNGLEGNIRGLSSQESNDFRQLAKWLEQVLPFSLLLLVLFIRQHLQGFFVTIWVSIVMFKSNEMVKKQTALKGDRKVSVLLSISLVFLLHVICIYWWYQDDDLLYSPLILLPPKATPHFWHAIFVVLINDVLVRQAAMSFKCLLLIYFKNDRGHSFRLQAQILTLVEHTLLLYRTLLPTPVWYRFFLNREYGSLFSSLTTGLYLTFKLTSSVEKVQRFFSALKALWGKDILYGVYATKEQVNAAGDLCAICQEKMCGPILLRCKHIFCEECVSEWFDRERTCPLCRALVKAGDIRSFGDGSTSLFFQLC 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01274 493 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 18 492 IPR044235 GO:0061630|GO:1904294
Accr3g01274 493 MobiDBLite consensus disorder prediction 144 164 - -
Accr3g01274 493 ProSitePatterns Zinc finger RING-type signature. 447 456 IPR017907 -
Accr3g01274 493 MobiDBLite consensus disorder prediction 1 29 - -
Accr3g01274 493 SMART ring_2 432 469 IPR001841 -
Accr3g01274 493 Pfam Zinc finger, C3HC4 type (RING finger) 430 473 - -
Accr3g01274 493 ProSiteProfiles Zinc finger RING-type profile. 432 470 IPR001841 -
Accr3g01274 493 SUPERFAMILY RING/U-box 426 474 - -
Accr3g01274 493 CDD RING-HC_RNFT1-like 430 470 - -
Accr3g01274 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 417 479 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01274 Accr-Chr3 14404901 14409217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01274 47 492 C3H Transcription Factor Family AT5G01960 55.605 3.44e-174 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01274 - K22379 qsa:O6P43_020068 534.643