Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01214 ATGAGTGGTCGCTTTTCTCGCACTATTTACGTTGGCAACCTGCCCTCAGATATAAGAGAATCAGAAATTGAGGATCTATTCTACAAGTATGGCCGTATATTGGATATTGAGTTAAAGATTCCACCTCGACCTCCATGTTATTGTTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGATGCAATTCGTGGTCGTGATGGCTACAATTTTGATGGCTGTCGATTAAGGGTGGAGCTAGCTCATGGTGGTAGGGGACCATCATCAAGTGATCGTCGTGGTTATGGTGGTGGTGGGGGTGGAGGAGGAGGTGGTGGTGGTGGTGGGAGCCGTTTTGGCATATCACGTCATTCTGAATATCGAGTTATTGTTCGTGGACTCCCATCATCTGCATCTTGGCAGGATTTGAAGGATCATATGCGGAAAGCTGGTGATGTATGTTTTGCTGAGGTTTCACGTGATAGTGAAGGTACATTCGGCATTGTTGACTACACTAATTATGACGACATGAAATATGCTGTTCGGAAACTTGATGACACTGAATTTAGAAATCCTTGGGCAAGAGCTTATATTCGGGTGAAGAAATATGAGGCCAGTCCCACAAGGAGCCGCAGCCGCAGCAGGAGCCCTGGCAGAAGCAGAAGTCCTAAAAGGAATAGAAGGTCATTGGAGCGATCTGTATCCAGGTCACCATCTAGGTCTAGATCACCATCACCAATCAAATCTAGGCCAAGATCACCATCACGGTCCCGGTCTCGGTCACAATCTGCATCACCACGCCAGGCTCGGTCAGGCAGTGTTTGA 801 0.4707 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRILDIELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGGGGGGSRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAVRKLDDTEFRNPWARAYIRVKKYEASPTRSRSRSRSPGRSRSPKRNRRSLERSVSRSPSRSRSPSPIKSRPRSPSRSRSRSQSASPRQARSGSV 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01214 266 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 256 - -
Accr3g01214 266 Gene3D - 2 117 IPR012677 -
Accr3g01214 266 Gene3D - 118 196 IPR012677 -
Accr3g01214 266 MobiDBLite consensus disorder prediction 196 266 - -
Accr3g01214 266 MobiDBLite consensus disorder prediction 228 266 - -
Accr3g01214 266 MobiDBLite consensus disorder prediction 81 109 - -
Accr3g01214 266 FunFam serine/arginine-rich splicing factor SR34A-like 2 118 - -
Accr3g01214 266 SUPERFAMILY RNA-binding domain, RBD 6 189 IPR035979 GO:0003676
Accr3g01214 266 FunFam serine/arginine-rich splicing factor SR34A-like 119 196 - -
Accr3g01214 266 SMART rrm1_1 8 78 IPR000504 GO:0003723
Accr3g01214 266 SMART rrm1_1 120 189 IPR000504 GO:0003723
Accr3g01214 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 183 IPR000504 GO:0003723
Accr3g01214 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Accr3g01214 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Accr3g01214 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 197 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01214 Accr-Chr3 13717300 13720285 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01214 8 177 Eukaryotic Initiation Factors Gene Family AT4G34110 23.295 2.26e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01214 K12890 - gmx:100800653 350.132