Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01212 ATGAGTGGTCGCTTTTCTCGCACTATTTACGTTGGCAACCTGCCCTCAGATATAAGAGAATCAGAAATTGAGGATCTATTCTACAAGTATGGCCGTATATTGGATATTGAGTTAAAGATTCCACCTCGACCTCCATGTTATTGTTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGATGCAATTCGTGGTCGTGATGGCTACAATTTTGATGGCTGTCGATTAAGGGTGGAGCTAGCTCATGGTGGTAGGGGACCATCATCAAGTGATCGTGGTGGTGGTGGTGGGAGCCGTTTTGGCATATCACGTCATTCTGAATATCGAGTTATTGTTCGTGGACTCCCATCATCTGCATCTTGGCAGGATTTGAAGGATCATATGCGGAAAGCTGGTGATGTATGTTTTGCTGAGGTTTCACGTGATAGTGAAGGTACATTCGGCATTGTTGACTACACTAATTATGACGACATGAAATATGCTGTTCGGAAACTTGATGACACTGAATTTAGAAATCCTTGGGCAAGAGCTTATATTCGGGTGAAGAAATATGAGGCCAGTCCCACAAGGAGCCGCAGCCGCAGCAGGAGCCCTGGCAGAAGCAGAAGTCCTAAAAGGAATAGAAGGTCATTGGAGCGATCTGTATCCAGGTCACCATCTAGGTCTAGATCACCATCACCAATCAAATCTAGGCCAAGATCACCATCACGGTCCCGGTCTCGGTCACAATCTGCATCACCACGCCAGGCTCGGTCAGGCAGTGTTTGA 765 0.4627 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRILDIELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRGGGGGSRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAVRKLDDTEFRNPWARAYIRVKKYEASPTRSRSRSRSPGRSRSPKRNRRSLERSVSRSPSRSRSPSPIKSRPRSPSRSRSRSQSASPRQARSGSV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01212 254 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 244 - -
Accr3g01212 254 SMART rrm1_1 8 78 IPR000504 GO:0003723
Accr3g01212 254 SMART rrm1_1 108 177 IPR000504 GO:0003723
Accr3g01212 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Accr3g01212 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 171 IPR000504 GO:0003723
Accr3g01212 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Accr3g01212 254 Gene3D - 2 106 IPR012677 -
Accr3g01212 254 MobiDBLite consensus disorder prediction 184 254 - -
Accr3g01212 254 Gene3D - 107 184 IPR012677 -
Accr3g01212 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Accr3g01212 254 MobiDBLite consensus disorder prediction 216 254 - -
Accr3g01212 254 FunFam serine/arginine-rich splicing factor SR34A-like 107 184 - -
Accr3g01212 254 SUPERFAMILY RNA-binding domain, RBD 6 177 IPR035979 GO:0003676
Accr3g01212 254 FunFam serine/arginine-rich splicing factor SR34A-like 2 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01212 Accr-Chr3 13717300 13720285 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01212 9 169 Eukaryotic Initiation Factors Gene Family AT4G34110 25.749 1.29e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01212 K12890 - gmx:100786491 350.903