Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01193 ATGATGGAGGTTGATGAGGAGTATATTCAAGGATCAGAAGAAAGCTTCATCAGCTGCTCAGAGCCACCACCTCAGAATCCAAGGAAGAAGAACAAAGTGGTGAACAAGAGGAGGTTTAGCGATGAACAAATCAGATCATTGGAGTGCATATTTGAGTCAGAGTCCAAGTTAGAACCAAGGAAGAAGATCCAAGTAGCAAGAGATCTTGGGTTGCAGCCTCGCCAAGTAGCCATATGGTTTCAGAACAGAAGAGCAAGAGGGAAATCCAAATGGATAGAGCAAGAGTACAGGAAGCTCAGAGATGAGTATGACAATTTAGTGTCCAAGTTTGAGTCCCTCAAGAAAGAGAAGGAGTCCTTGCAAGCGGAGATGCAGAATCTGCATGATCTGATGGAGACATCTAAGAATGATGAAGGGAAAAAGAATAAAGATTGTAGGAGTAGTGAAGTAAAGCCAAGTTCTTCTTATGAGGGTTTGGATGAGGTCAGAGACACAGAAGGCATGCATTTACAAGATCAAAGTGAAATGATGAGCAAGAATAAAAATGGTTATTGTGAGGATACAGAATACCAACTTCTGAGAATGGACGAGCTTGAAAAATGGTACAGTAGTGTTGATCCAAGTGGCCTCTTAGATCAACCTAGTTCACAATGGTTTGATTTCTGGACTTGA 672 0.4167 MMEVDEEYIQGSEESFISCSEPPPQNPRKKNKVVNKRRFSDEQIRSLECIFESESKLEPRKKIQVARDLGLQPRQVAIWFQNRRARGKSKWIEQEYRKLRDEYDNLVSKFESLKKEKESLQAEMQNLHDLMETSKNDEGKKNKDCRSSEVKPSSSYEGLDEVRDTEGMHLQDQSEMMSKNKNGYCEDTEYQLLRMDELEKWYSSVDPSGLLDQPSSQWFDFWT 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01193 223 ProSiteProfiles 'Homeobox' domain profile. 30 90 IPR001356 GO:0003677
Accr3g01193 223 PRINTS Lambda-repressor HTH signature 61 70 IPR000047 GO:0003677
Accr3g01193 223 PRINTS Lambda-repressor HTH signature 70 86 IPR000047 GO:0003677
Accr3g01193 223 SMART HOX_1 28 94 IPR001356 GO:0003677
Accr3g01193 223 MobiDBLite consensus disorder prediction 1 34 - -
Accr3g01193 223 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 29 178 IPR045224 GO:0003700
Accr3g01193 223 MobiDBLite consensus disorder prediction 131 164 - -
Accr3g01193 223 Pfam Homeodomain 36 88 IPR001356 GO:0003677
Accr3g01193 223 Pfam Homeobox associated leucine zipper 91 131 IPR003106 GO:0006355|GO:0043565
Accr3g01193 223 FunFam Homeobox-leucine zipper protein ATHB-7 14 90 - -
Accr3g01193 223 ProSitePatterns 'Homeobox' domain signature. 65 88 IPR017970 GO:0000981|GO:0006355
Accr3g01193 223 CDD homeodomain 36 91 IPR001356 GO:0003677
Accr3g01193 223 SUPERFAMILY Homeodomain-like 18 89 IPR009057 -
Accr3g01193 223 Coils Coil 96 137 - -
Accr3g01193 223 Gene3D - 18 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01193 Accr-Chr3 13422163 13422938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01193 38 197 Homeobox Transcription Factor Family AT3G61890 48.824 8.58e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr3g01193 Homeodomain 8.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01193 K09338 - gmx:100499926 229.565