Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01178 ATGGCGGGTTCTGACACCAAGATCGTGCAGGAGTTGATTTTGTACGCAGCGAGCGCCGCGTTGAGTTGCTTGGTATTGTTTGTAGGTCTCCGGCAACTCGACCCGAACCGTGAAGCTTCAAAGAAGGCACTCGAGCATAAGAAGGAGATAGCCAAGCGCCTGGGTCGTCCTCTCATTCAGACAAACCCTTACGAGGATATTATTGCTTGTGATGTTATAAATCCTGATGATATTGATGTGGAGTTCGAATCCATTGGAGGGCTGGAAAAGATCAAGCAAGCTCTATTTGAGCTTGTTATACTGCCTCTTAAACGACCTGAGCTGTTTTCTCATGGCAAGCTTCTTGGACCACAGAAAGGGGTACTATTGTATGGCCCCCCTGGAACTGGGAAAACTATGCTCGCCAAAGCTATTGCAAAAGAGTCTGGAGCTGTTTTTATTAATGTGAGGATATCAAACCTGATGAGCAAGTGGTTTGGTGATGCTCAAAAGCTTGTGGCAGCTGTATTTAGCCTGGCCTATAAGCTCCAGCCTGCCATTATATTCATTGATGAAGTTGATAGTTTTCTTGGTCAGCGCCGTTCAACAGATCATGAGGCATTATTAAACATGAAAACTGAGTTTATGTCCTTGTGGGATGGATTTACTACAGACCAAAATGCTCGAGTGATGGTCCTTGCGGCAACTAATCGTCCTTCAGAACTTGATGAAGCCATACTCCGGCGCCTTCCTCAAGCCTTTGAAATTGGAGTTCCAGATAAAAAGGAGAGGGTTGAGATATTAAAGGTTGTCTTGAAGGGTGAGATAATTGAAGACAACATTGACTTTGATCGCATAGCTGGCTTGTGTGAGGGCTATACGGGTTCTGATTTATTTGAACTCTGTAAGAAAGCTGCCTATTTCCCTATTAGGGACCTACTGGATGAAGAGAAAAAAGGAAAACAGTCTCCCGCACCAAGGCCATTGTCACAGTCAGATTTGGAGAAGGCCCTTGCCACTTCAAGGAAAACGAAGGTTGCTGCAGGTGAATACAGCGGATTAGCCCTACATTCGCCCAGATGGACAGGCCACAGGGAGTCAGAATAA 1086 0.4558 MAGSDTKIVQELILYAASAALSCLVLFVGLRQLDPNREASKKALEHKKEIAKRLGRPLIQTNPYEDIIACDVINPDDIDVEFESIGGLEKIKQALFELVILPLKRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRSTDHEALLNMKTEFMSLWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGVPDKKERVEILKVVLKGEIIEDNIDFDRIAGLCEGYTGSDLFELCKKAAYFPIRDLLDEEKKGKQSPAPRPLSQSDLEKALATSRKTKVAAGEYSGLALHSPRWTGHRESE 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01178 361 ProSitePatterns AAA-protein family signature. 223 242 IPR003960 GO:0005524|GO:0016887
Accr3g01178 361 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 28 340 - -
Accr3g01178 361 MobiDBLite consensus disorder prediction 311 344 - -
Accr3g01178 361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 330 IPR027417 -
Accr3g01178 361 CDD RecA-like_ATAD1 84 249 - -
Accr3g01178 361 Pfam ATPase family associated with various cellular activities (AAA) 121 250 IPR003959 GO:0005524|GO:0016887
Accr3g01178 361 Gene3D - 79 337 IPR027417 -
Accr3g01178 361 FunFam ATPase family AAA domain-containing protein 1 79 256 - -
Accr3g01178 361 Pfam AAA+ lid domain 273 309 IPR041569 -
Accr3g01178 361 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Accr3g01178 361 SMART AAA_5 117 253 IPR003593 GO:0016887
Accr3g01178 361 Gene3D - 252 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01178 Accr-Chr3 13289935 13295153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01178 38 317 Calmodulin-binding Proteins AT3G56690 32.394 1.86e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01178 K22530 - csv:101204071 637.106