Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01172 ATGGCGGGCGATTCAATTGATCACGCCTCACTCATTCCAGCATCTGAATTACTTTTTCATACTGTCCTTAGTATATCTGATATCACCAAAGCAGCCAATCAGATTCTGATTCAGAAGGATAATTTCAGAAAATTCTCAACTCACTTGGAGAATGTCTCATTAATTTTAAAACGACTATCAAAAGAAGACATACACCATGCAGAGAGCTTGAAAAATTCCCTTGGTGTCCTCAACCAACAAGTTAAAGCTGCTAAACAGCTGGTTTCTGAGTGCAACTCCAAGAGTAAGATTTATCTTTTCATCAATTCCAGAAAGATTGCTGAGAATTTGGAGTGTTGTACGAAAAGCATAAGCCGAGCTGTGAGCGTCATCCCTCTCACCTCTTTGGATGTTTCTTCTGGTCTAAGTAAACAAATAAGTGAACTATGCCAGAACATGCTAGATGATGAGTATAAAGCAGCTGCAGCAGAAGAGGAAATTCTGGAAAAACTTGAGTTAGCAATACAAGAGGGAAATGCTGAGCGCTCTAACGCGAATCAGTTGCTGGCTCATATTGTGGATGTCATTGGGATCTCAACTGAGCATGCTGTTATAAAGAGAGAATTTAAAGAGTTGAAAAGTGACATGCAAATTTCTGAGCCAAGAAGAGATATAGCAGAAGCTCTGCATATGGAGCAGATTGTTGGATTGCTCGAAAAAGCTGATTCCGCTACTTCATCACAAGAGAAGGAGAGGAAGTATTTTGAAAAGCGAAATTCTCTGGGACAACAGCTGTTGGAGCCGCTACATTCCTTTTACTGTCCAATCTCACTTGATATCATGGAAGATCCTGTGGAGACTTCTTCTGGCAAGACATTTGAGAGAAAGGCAATAGAGAAGTGGCTTGCAGCAGGGAATAAGAACTGCCCCTTAACCATGTTGCCTCTGGATACTTCAAAATTAAGACCAAATAAGACTCTTCGACAGTCAATTCAAGAATGGAAAGATAGGAACACCATGATTACCCTTTCTACTCTCAAGTCCAAGCTTGAGAGCGATGATGAAGCCGAAATACTTCAATCCTTGGAAAAATTGCAGGGCCTCTGCTTGGAAAGACAGATGCACCGAGAATGGGTAAAAATGGAGAATTACATCACAACTCTAATCAAGCTCCTCGGTGCTAGGAATAGAGAAATAAGGAAGTCTGTTCTCTCCACCCTGTCTTTGCTTGCAAAGGACAATGAAGAGAACAAGGAAGATGTTGCTAAAGTTGACCATGCACTAGAATCAATTGTTCGCTCACTCGCACGTCCAATAGAGGAAAGCAAGTTAGCAGCAGAGTTGCTGTTAGAATTGTCTAGAAGTACTACAGTGCGTGATCTCATAGGAGATGTTCAAGGAAGCATACTCCTCCTGGTCACAATGTTAAGCAGTGATGATGCTGAAGCAGCCAATAATGCACGTGAGCTTCTGGATAACCTCTCTTTCCTTAACCACAATGTTATAGAGATGGCAAAGGCAAATTATCTCAAGCCTTTGCTGCAGAACCTTTCTTCAGGAACAGAAAATGTGAAGATAATCATGACCAGAACTCTATCAGAGATTGAATTGACAGACCATAATAAAGCATCAATAGTCAAAGATGGGGCACTGCAGCCACTTCTTCAGTTGCTCTCTAATCCTGACGTGCAAATCAAGGAAGTAGCTGTGAAAGCTCTACTGCAGCTTTCAACCCTGCCAGAAAATGGCCTACAGATGATTAGGGAGGGTGTTGCTCAATCACTGTTCGAGCTGCTATATCGTCACAGTTTACAATCAACCGCTCTGCGGGAACAGGCAACTGACACTATGATGCATCTTGCAATGTCAACCACTCACCAACGAGCTGATGAAGTTCAAGTTTCATTGTTAGATTCTGAGGATGACGTCTTTAAATTCTTCTCACTTGTTTCCTTCACCGGACCTTATATACAAAGCAAGATTCTGAAAACTTTCCTGGCAATGTGCCAATCTCCCTCTGGTCTCACCATCAGAGAAAGGTTAAGACAGCTCTCAGCTGTCCAAGTATTAGTTCAATTATTAGAGCTCAATAACCAAACTGTGCGGGAAAACGCGGTGAAGCTGTTCTATTACATGACAGAAGGCGGTGATTGCAGCCACTTTACGTCACATATAACTGAAAGATGCATCATTGTCTTGCTCACCATCATCAAGACCACTGAAGATGCAGAAGAAATGGTTTCTGCTATGGGTATCATCTCAAGACTTCCAAGGGAATCACAAATAACCCGGTGGCTTTTAGATTCTGGGGCAGTTAAAATTATCTTGGATTGTCTTTCGGACCGACATAAGCATGCCTCGCACAAACGGCAGGTCATCGAGAACTCTGTTCTAGCTCTTTGCCGTTTTACTGTCTCAACAAACCTAGAGTGGCAGAAGGCGGTAGCTCAAGAAGGCATCATCCCTATCCTGGTGCAATTGCTGGAATCTGGGACACCTCTTTCGAAACAAAATGCAGCCATTTCAATCAAGCAGTTTTCAGAAAGCTCATGGCTCTTGAGCAAACCGATAAAAAAGCCGGGTATTTTCAAATTCTGCTTTGTACCTCATGAAACCGGCTGTCCGGCACATCTAGGTTCCTGCACGGTTGAGTCTTCATTCTGTATCATAGAGGCTGATGCTTTGAAGCCCCTTGTGAGGTTGCTTAGAGAGCAAGAAATTGGAACATGTGAAGCTTCCTTAGATGCACTTTTGACTTTGATTCATGGTGGAACACCACAAGGTGGTGCGTGTAAGGTACTTGCAGATGCAGATGCTATTACTCCACTGATAAATTTATTGAGTCTTCAGTCTGCCAGATTGGAGGAAAAAATTCTAGTAGCTTTAGAGAAAATTTTTCAAGTGGATGAAATAAAGAACAAGTATAAAGCTTCAGCCACAATGCCTTTGGTAGCCATGACCCAGAGGAAAGATAGTCATCGCTTGAGAAGTCTTGCTGCAAGAGTCCTTGCACAATTGGGTGTGCTTGAGAAACAGTCTTCTTATTTTTAA 3030 0.4228 MAGDSIDHASLIPASELLFHTVLSISDITKAANQILIQKDNFRKFSTHLENVSLILKRLSKEDIHHAESLKNSLGVLNQQVKAAKQLVSECNSKSKIYLFINSRKIAENLECCTKSISRAVSVIPLTSLDVSSGLSKQISELCQNMLDDEYKAAAAEEEILEKLELAIQEGNAERSNANQLLAHIVDVIGISTEHAVIKREFKELKSDMQISEPRRDIAEALHMEQIVGLLEKADSATSSQEKERKYFEKRNSLGQQLLEPLHSFYCPISLDIMEDPVETSSGKTFERKAIEKWLAAGNKNCPLTMLPLDTSKLRPNKTLRQSIQEWKDRNTMITLSTLKSKLESDDEAEILQSLEKLQGLCLERQMHREWVKMENYITTLIKLLGARNREIRKSVLSTLSLLAKDNEENKEDVAKVDHALESIVRSLARPIEESKLAAELLLELSRSTTVRDLIGDVQGSILLLVTMLSSDDAEAANNARELLDNLSFLNHNVIEMAKANYLKPLLQNLSSGTENVKIIMTRTLSEIELTDHNKASIVKDGALQPLLQLLSNPDVQIKEVAVKALLQLSTLPENGLQMIREGVAQSLFELLYRHSLQSTALREQATDTMMHLAMSTTHQRADEVQVSLLDSEDDVFKFFSLVSFTGPYIQSKILKTFLAMCQSPSGLTIRERLRQLSAVQVLVQLLELNNQTVRENAVKLFYYMTEGGDCSHFTSHITERCIIVLLTIIKTTEDAEEMVSAMGIISRLPRESQITRWLLDSGAVKIILDCLSDRHKHASHKRQVIENSVLALCRFTVSTNLEWQKAVAQEGIIPILVQLLESGTPLSKQNAAISIKQFSESSWLLSKPIKKPGIFKFCFVPHETGCPAHLGSCTVESSFCIIEADALKPLVRLLREQEIGTCEASLDALLTLIHGGTPQGGACKVLADADAITPLINLLSLQSARLEEKILVALEKIFQVDEIKNKYKASATMPLVAMTQRKDSHRLRSLAARVLAQLGVLEKQSSYF 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01172 1009 SUPERFAMILY ARM repeat 877 1000 IPR016024 -
Accr3g01172 1009 CDD MLKL_NTD 18 149 - -
Accr3g01172 1009 SUPERFAMILY RING/U-box 249 333 - -
Accr3g01172 1009 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Accr3g01172 1009 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Accr3g01172 1009 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Accr3g01172 1009 Coils Coil 67 87 - -
Accr3g01172 1009 Gene3D - 18 127 IPR036537 GO:0007166
Accr3g01172 1009 SUPERFAMILY ARM repeat 503 850 IPR016024 -
Accr3g01172 1009 Gene3D - 498 855 IPR011989 -
Accr3g01172 1009 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 1009 - -
Accr3g01172 1009 Gene3D - 866 1000 IPR011989 -
Accr3g01172 1009 SMART arm_5 490 530 IPR000225 GO:0005515
Accr3g01172 1009 SMART arm_5 666 707 IPR000225 GO:0005515
Accr3g01172 1009 SMART arm_5 801 841 IPR000225 GO:0005515
Accr3g01172 1009 SMART arm_5 752 798 IPR000225 GO:0005515
Accr3g01172 1009 SMART arm_5 448 489 IPR000225 GO:0005515
Accr3g01172 1009 SMART arm_5 365 405 IPR000225 GO:0005515
Accr3g01172 1009 SMART arm_5 875 915 IPR000225 GO:0005515
Accr3g01172 1009 SMART arm_5 919 960 IPR000225 GO:0005515
Accr3g01172 1009 SMART arm_5 407 447 IPR000225 GO:0005515
Accr3g01172 1009 SMART arm_5 531 571 IPR000225 GO:0005515
Accr3g01172 1009 CDD RING-Ubox_PUB 265 314 IPR045210 -
Accr3g01172 1009 Coils Coil 154 181 - -
Accr3g01172 1009 Gene3D - 337 497 IPR011989 -
Accr3g01172 1009 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Accr3g01172 1009 Pfam Armadillo/beta-catenin-like repeat 532 570 IPR000225 GO:0005515
Accr3g01172 1009 Pfam MCAfunc domain 25 141 IPR045766 -
Accr3g01172 1009 SUPERFAMILY ARM repeat 335 528 IPR016024 -
Accr3g01172 1009 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 336 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01172 Accr-Chr3 13163529 13167199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01172 263 1009 U-box Gene Family AT1G76390 27.975 6.51e-58 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01172 - - pcin:129302416 1546.95