Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01096 ATGGACGACGGCTTCTCTGATATTTTCGAAGACAGAGACTTAGACTTGGGTGGAGACGACCTGCTTGCTATTTTGGACTCCCTCGAGGACTTCACCAATTTCCCTCCCGTTGAAGAATCCCTTGCCGTTACCTCAAAAACCAGAGGCAACAAGAGACAGAAGCTTTCAGAGTCATCATCTGAAGAACCTAAGATATCTCATATCACTGTGGAGCGCAACCGAAGAAAGCAAATGAACGAGCACTTGTCCGTCTTGAGGTCCCTCATGCCTTGCTTCTATGTCAAACGAGGTGATCAAGCATCAATAATAGGAGGAGTGGTAGAGTACATCAACGAGTTGCAGCAACTTCTGCAATCCCTAGAGGCCAAGAAACAGAGAAAGGTGTATAATGAAGTTCTGAGCCCTAGGCCGGTGTCAAGTCCGAGGCCTTCGCCAAGAGTGATGCCGCCGGTGAGCCCTAGGCTAAACCTACCCATTAGCCCAGGCACACCACAGCCAGGTAGCCCCTACAAGCCCCAACAACCCAGACTGTCCACCTCTCTAGAACCTTCTCCCACATCTTCTGCTTCTTCCTCCATCAACGACAACATCAACGACCTCATCGCAAACTCCAAGTCCTCCATCGCCGACGTCGAGGTTAAGTTCTCAGGGCCCCACGTACTCTTGAAAACCCTATCTCCTCCAATCCCTGGACAAGCGTTAAAAATCATCTCCGCCCTTGAAGATCTGGCCCTCGAAATCCTTCAGGTCACCATCACCACTGCTGAACAAGGCGTACTTAATTCATTCACCATCAAGATTGGAGTAGAATGTCAGCTCAGTGCTGAGGATCTGGCTCAACAGGTCCAGCAAACTTTCTCGCCACATGGGATTCCCTCGTGA 882 0.5011 MDDGFSDIFEDRDLDLGGDDLLAILDSLEDFTNFPPVEESLAVTSKTRGNKRQKLSESSSEEPKISHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVEYINELQQLLQSLEAKKQRKVYNEVLSPRPVSSPRPSPRVMPPVSPRLNLPISPGTPQPGSPYKPQQPRLSTSLEPSPTSSASSSINDNINDLIANSKSSIADVEVKFSGPHVLLKTLSPPIPGQALKIISALEDLALEILQVTITTAEQGVLNSFTIKIGVECQLSAEDLAQQVQQTFSPHGIPS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01096 293 CDD bHLH_AtFAMA_like 65 138 - -
Accr3g01096 293 Gene3D - 52 128 IPR036638 GO:0046983
Accr3g01096 293 SMART finulus 68 119 IPR011598 GO:0046983
Accr3g01096 293 MobiDBLite consensus disorder prediction 172 192 - -
Accr3g01096 293 FunFam Transcription factor SPEECHLESS 54 128 - -
Accr3g01096 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 61 138 IPR036638 GO:0046983
Accr3g01096 293 MobiDBLite consensus disorder prediction 42 64 - -
Accr3g01096 293 Pfam Helix-loop-helix DNA-binding domain 64 114 IPR011598 GO:0046983
Accr3g01096 293 MobiDBLite consensus disorder prediction 50 64 - -
Accr3g01096 293 Coils Coil 106 130 - -
Accr3g01096 293 PANTHER TRANSCRIPTION FACTOR FAMA 45 286 IPR044283 GO:0003700|GO:0010052
Accr3g01096 293 MobiDBLite consensus disorder prediction 133 192 - -
Accr3g01096 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 62 113 IPR011598 GO:0046983
Accr3g01096 293 MobiDBLite consensus disorder prediction 138 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01096 Accr-Chr3 12365766 12367308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01096 5 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 49.852 2.10e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr3g01096 HLH 3.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01096 K20558 - rcu:8274388 330.487