Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01048 ATGGCTCTGTTGTTGGACGACTGTGAGAGCATTTTACTGTCGTTAGAGTCACACAAATCGGTGCCGGCTCCATTCCTCACCAAGACATACCAGCTGGTGGATGATCCCACCACCGATCACATTGTTTCTTGGGGCGAAGACGACACCACCTTCGTCGTTTGGCGCCCTCCTGAGTTCGCCCGAGACCTCCTCCCCAACTACTTCAAGCACAACAATTTCTCCAGCTTCGTTCGCCAGCTCAACACTTACGGTTTTAGGAAGATCGTGCCTGACAGATGGGAGTTCGCAAATGAGTTTTTTAGGAAGGGAGCGAAGCATTTACTGTGCGAGATCCACAGAAGAAAGACAGCTCAGCTTCATCATCACCAGCAAGTGCCCGTTAATCATCCTCCTCACCATCATCATCAGCTTCCGTTGGGGCTCAACGTTCCTACCTTTTTTCCCTTCTCCGGCACCAGAATCAGCGTCTCTCCGTCCATCGACTCCGACGAGCAGCCGCCCCATTGGTGTGACTCGCCTCCGAGCTGTACCGGTACTGGTATGGTGACGCTGTCAGAGGACAACGAAAGACTGAGAAGAAGCAACAACATGCTCATGTCTCAGCTGGCCCACTTGAAAAAACTCTATAACGACATCATCTATTTCGTCCAGAATCATGTCAAGCCTGTCGCTCCCAGCAATTCTTTCTCTTCCTCCTCTTTTCTCCTACCTCATAGTACATGTTCACCATCACCCATGCCTCCTTCTGCTACAAACGTTTCCGCAGTCCAAAGGCAAATGAACCAGCTTCTGGGTTATTATTCTACCTCTGCTAATAACCCTAAGCAAACTACCACCCCTCAACTCTCCCGGCTCGTGAGACCTCCCATGAACTACACCTCAAGAAGTTCAGTCTCCATTGTGGAAGAACCCTGCAGCAATAATAATAATACCAAGCTTTTTGGTGTGTCCCTTCTATCCAAGAAAAGGCTCCATCCTGATTCTGATACTATTACTCCTACCGATCCCGAAATGAACAAGGTTCGATTGGTCTTGGAAAATGATGACGACCTGTCTTTGAATCTCATGCCCCCTTCGTCATGTTACAATTCTTAG 1095 0.4895 MALLLDDCESILLSLESHKSVPAPFLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFRKGAKHLLCEIHRRKTAQLHHHQQVPVNHPPHHHHQLPLGLNVPTFFPFSGTRISVSPSIDSDEQPPHWCDSPPSCTGTGMVTLSEDNERLRRSNNMLMSQLAHLKKLYNDIIYFVQNHVKPVAPSNSFSSSSFLLPHSTCSPSPMPPSATNVSAVQRQMNQLLGYYSTSANNPKQTTTPQLSRLVRPPMNYTSRSSVSIVEEPCSNNNNTKLFGVSLLSKKRLHPDSDTITPTDPEMNKVRLVLENDDDLSLNLMPPSSCYNS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01048 364 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr3g01048 364 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr3g01048 364 Gene3D - 17 116 IPR036388 -
Accr3g01048 364 FunFam Heat stress transcription factor B-4 17 115 - -
Accr3g01048 364 Coils Coil 188 208 - -
Accr3g01048 364 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Accr3g01048 364 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr3g01048 364 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr3g01048 364 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr3g01048 364 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Accr3g01048 364 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 265 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01048 Accr-Chr3 11843078 11844268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01048 9 360 HSF AT1G46264 53.887 1.27e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Accr3g01048 HSF_DNA-bind 5.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01048 K09419 - gmx:100781389 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g01048 3 11843078 11844268 Accr4g01037 4 9847824 9849018 CCT
Accr3g01048 3 11843078 11844268 Accr3g01048 3 11843078 11844268 ECH