Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01043 ATGGCCGATATGTACGGTACTCCTCCCTCTCTGCTCACCGCCTCCGCCATGCCATCTGATTCCGACGATTTCTCCACCTTCTTCTCCCACCTTCTCCATAACTCGCCCTCCTCTTCCATCCTTTCCAAACCCAGAACCTCACCGCCTCCGTGGCTCCCTCCGCCGGTGGGGACCGCCGGCTTAGGTCAATCGAGCTCGGACTTACCTCACAAGAATGGCAAGCCCGTTGGTTATTCCGGTGCAGTTTCTGATTCTTTCGAATTTTCTGATCCCTATGCTTATGTTCCGGCTGATGTGAAAGAGGCTGCTGGAAATGAGTTCTTTCCCGCTGGTATCGACGATTCTGATGAAAATACTACTTCCTTCAAAGAACTTAGGAGTTCGCCGGAGATTGATCCCGGCGATTTCATTTGTGCCCTCGAGAATGGTGAGTCGTCGCAGACAAAGCGATTCCCAGGACGTACTTCCTCAAAGAGGAGCAGAGCAGCAGAGGTTCATAATATGTCTGAAAAGAGAAGGAGGAGTAGGATTAACGAGAAAATGAAGGCCTTGCAGAACTTAATTCCAAATTCTAACAAGACGGATAAAGCTTCAATGCTGGACGAGGCAATTGAATATTTGAAGCAACTTCAGTTTCAAGTGCAAATGTTAGTGATGAGGAACGGTTTGAGCTTGCATCCAATGTGTTTACCAGGAGGGCTGCAATCTAGGACACTGCCTCAGACAGACTTGAGACTTTCAAAGAATTGCAGCATCTCTGATCAACCTGTGATCATCCCCTCCATGGCCAACCCAGATACCTCATCAGGTTTCAGATTTCACATTGGACAATTCGACCCTTCTACGTCATCCAAGGATGCACTCTCTGATGGCGCACCACAACTCCATTTGGACGCCACAAAGATGGAAAAGAGCGCGTCTTCAGATGTCTCCTAA 936 0.4872 MADMYGTPPSLLTASAMPSDSDDFSTFFSHLLHNSPSSSILSKPRTSPPPWLPPPVGTAGLGQSSSDLPHKNGKPVGYSGAVSDSFEFSDPYAYVPADVKEAAGNEFFPAGIDDSDENTTSFKELRSSPEIDPGDFICALENGESSQTKRFPGRTSSKRSRAAEVHNMSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQFQVQMLVMRNGLSLHPMCLPGGLQSRTLPQTDLRLSKNCSISDQPVIIPSMANPDTSSGFRFHIGQFDPSTSSKDALSDGAPQLHLDATKMEKSASSDVS 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01043 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Accr3g01043 311 Gene3D - 156 219 IPR036638 GO:0046983
Accr3g01043 311 Pfam Helix-loop-helix DNA-binding domain 165 211 IPR011598 GO:0046983
Accr3g01043 311 CDD bHLH_AtPIF_like 161 223 IPR047265 -
Accr3g01043 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 221 IPR036638 GO:0046983
Accr3g01043 311 Coils Coil 167 187 - -
Accr3g01043 311 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 17 273 IPR031066 -
Accr3g01043 311 FunFam Basic helix-loop-helix transcription factor 156 219 - -
Accr3g01043 311 SMART finulus 167 216 IPR011598 GO:0046983
Accr3g01043 311 MobiDBLite consensus disorder prediction 157 174 - -
Accr3g01043 311 MobiDBLite consensus disorder prediction 145 174 - -
Accr3g01043 311 MobiDBLite consensus disorder prediction 35 80 - -
Accr3g01043 311 MobiDBLite consensus disorder prediction 281 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01043 Accr-Chr3 11785472 11787756 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01043 161 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 90.278 6.59e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr3g01043 HLH 1.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01043 - - pcin:129303255 471.085