Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01041 ATGGCCGATATGTACGGTACTCCTCCCTCTCTGCTCACCGCCTCCGCCATGCCATCTGATTCCGACGATTTCTCCACCTTCTTCTCCCACCTTCTCCATAACTCGCCCTCCTCTTCCATCCTTTCCAAACCCAGAACCTCACCGCCTCCGTGGCTCCCTCCGCCGGTGGGGACCGCCGGCTTAGGTCAATCGAGCTCGGACTTACCTCACAAGAATGGCAAGCCCGTTGGTTATTCCGGTGCAGTTTCTGATTCTTTCGAATTTTCTGATCCCTATGCTTATGTTCCGGCTGATGTGAAAGAGGCTGCTGGAAATGAGTTCTTTCCCGCTGGTATCGACGATTCTGATGAAAATACTACTTCCTTCAAAGAACTTAGGAGTTCGCCGGAGATTGATCCCGGCGATTTCATTTGTGCCCTCGAGAAGAATGGTGAGTCGTCGCAGACAAAGCGATTCCCAGGACGTACTTCCTCAAAGAGGAGCAGAGCAGCAGAGGTTCATAATATGTCTGAAAAGAGAAGGAGGAGTAGGATTAACGAGAAAATGAAGGCCTTGCAGAACTTAATTCCAAATTCTAACAAGACGGATAAAGCTTCAATGCTGGACGAGGCAATTGAATATTTGAAGCAACTTCAGTTTCAAGTGCAAATGTTAGTGATGAGGAACGGTTTGAGCTTGCATCCAATGTGTTTACCAGGAGGGCTGCAATCTAGGACACTGCCTCAGACAGGTTTGAATTTTGACGACTCCGATGTATATCACAATACTTATCGGGGAATTGCCTCATCGTCCCTGAATGCTGATGAATGCTTGGTGCCCCCACCAGACTTGAGACTTTCAAAGAATTGCAGCATCTCTGATCAACCTGTGATCATCCCCTCCATGGCCAACCCAGATACCTCATCAGGTTTCAGATTTCACATTGGACAATTCGACCCTTCTACGTCATCCAAGGATGCACTCTCTGATGGCGCACCACAACTCCATTTGGACGCCACAAAGATGGAAAAGAGCGCGTCTTCAGATGTCTCCTAA 1035 0.485 MADMYGTPPSLLTASAMPSDSDDFSTFFSHLLHNSPSSSILSKPRTSPPPWLPPPVGTAGLGQSSSDLPHKNGKPVGYSGAVSDSFEFSDPYAYVPADVKEAAGNEFFPAGIDDSDENTTSFKELRSSPEIDPGDFICALEKNGESSQTKRFPGRTSSKRSRAAEVHNMSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQFQVQMLVMRNGLSLHPMCLPGGLQSRTLPQTGLNFDDSDVYHNTYRGIASSSLNADECLVPPPDLRLSKNCSISDQPVIIPSMANPDTSSGFRFHIGQFDPSTSSKDALSDGAPQLHLDATKMEKSASSDVS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01041 344 MobiDBLite consensus disorder prediction 144 174 - -
Accr3g01041 344 FunFam Basic helix-loop-helix transcription factor 157 220 - -
Accr3g01041 344 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 17 311 IPR031066 -
Accr3g01041 344 MobiDBLite consensus disorder prediction 158 174 - -
Accr3g01041 344 MobiDBLite consensus disorder prediction 314 344 - -
Accr3g01041 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 222 IPR036638 GO:0046983
Accr3g01041 344 Coils Coil 168 188 - -
Accr3g01041 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Accr3g01041 344 MobiDBLite consensus disorder prediction 35 80 - -
Accr3g01041 344 CDD bHLH_AtPIF_like 162 224 IPR047265 -
Accr3g01041 344 SMART finulus 168 217 IPR011598 GO:0046983
Accr3g01041 344 Pfam Helix-loop-helix DNA-binding domain 166 212 IPR011598 GO:0046983
Accr3g01041 344 Gene3D - 157 220 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01041 Accr-Chr3 11785472 11787756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01041 162 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 90.278 1.99e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr3g01041 HLH 1.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01041 - - pcin:129303255 513.842