Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01040 ATGCAAGGTCAGAGGGGTGCAATTGGTTCCTTGCCCGAAACCTTAGAATTCAATTGTGGATCCACATCAAGTAATCCTACTGTGGATCAACCAATTTGCTGGAATAATATGCGGAATCCTGTTGATAATGATAGTGATATACCAGAGTATTTACTTCCTTTGAGCAATATGAACCCACCATATATGAATCCGATAAGCCATGAATGGCAGAATTCAAGTGGATGGAGCTTAGGTGGGCCCAGTTCTAGTAACACCCAGAGTGAAATCAACAATAATCAGCAGAAAAGAGAGCTTGGATGGACATCTCCAATCAGTGCTAATGCTGCAGCTGGTCCAAGAGCTGAAGGAAGGCACTTTGAACCAACTATTGTTCTTTCTTCTGACAATGTCAATTCCAGTCCTATGTACATGCACAGCTCCAATTCTCACATGTCACCAAATCTCAACTTAAATGCTGAGTTGGCAGATAGTGGTGATAACAGCCAGCATTTGGAGCACCCTATCTTGCACAAATCTAGTGGATCAGTAAATGAGCGTGTTCTTCCTGGCATTGTTTCTGGTCCTATTCCTCATCCTCCTGGAAATAACAGCTTTGTGCCAGAAGGCACTGATGCTAGGCCTGGATGTTCTGTAGATGCGCGCCGTGCGCCCTGTAAAAGAAAGGCCATTGAAGAAAATGTTGGACCATCTTTGGATGGTGGAAGTTCTAGTTCTATTCAGCATACAGAAAGTAGTGCTTGGAACACTCTTCCAACTCAGGAGAATGCTGGGAGCAGTTTAAGTAGATCTGCTTCATCTGAAGAGGTAAATGCTAGACTTGGGCTGGGAATGGGGGATGAAGCCCCTGAAAATCTTCCTCATTCAAATGATGCAGGGAGCACAGAAAGCTTCCGCAGGAATCTCCGTTTGAGGATAAGTCCTTCAAGCCAACAAAATTCAATTCCTCCCCCTGCGTTCTCTTCTGGGAGTGTGATTAGGCATTCTAGTATGTCAACCTCTTCAATGTCACAAAGGTTCCCGCCTGTTGATAACCCCTTGGACTTGAGGGCAGCACCAATGGTAGATAATATAATTCCTCAAAGCCAGCCCCTTGTGATCCATGTTCCTACTTTACCAAGGAATATGCAATCATTAAGATGGAATGGTAGTTCTAGCTCAAGCAACAGCCAATCATCAAGCCCACTCGTTTGTGCAGATAGGGATAACCAGCCACGGGAAGAATCAAGCTCAAGAAGTATTTCTAGAAACATTTTTGATCGCCCTGTGTTTGTACCTTCAACTGATTTAAGAAATCTTGTTCGAAATCCAACGGTTAGAGCTTCAGGTAGTGCAAATTTAAGCATGTCTGGAAATGTTGCTTCCTCATCACGGGCTGGATCAAATTCAGCTATCAACCAGTCATCTACCTCGGCATGGGTTTCTCGTCCTAATCCTCCTCAATATCCACGTAGATTGTCTGAATATGTTCGTCGATCTTTGTTTTCTCCTCCTTCTGAGACCGCTGGAAGTCAAAATCCAAGCAATAATTATTCTTCTTTGCGCTCTGGTCCTACTTCTTCATCTGAAGAAAGGGTGCCTTCATCTGGGGCTGGTATCCAAGGACATCATCAATCACAGCCGAGATCTTTGTGGATGGAAAGGCAAGGTGATGCTGAATTTGGAATTCCATATTCATTGCGAAGTTTGGCTGCTGCTGGTGAAGGAAGTAGTAGTAGACTAGTATCTGAGCTTCGTAATGTTTTGGGCCTCATGCGAAGGGGTGGAGGCCTGAGATTTGAGGATGTTATGATTTTTGACCAATCAGTCTTTTCTGGAGTGGCTGATATTCATGATCGCCACAGGGATATGCGCCTTGATGTTGATAACATGTCATACGAGGAGCTGCTTGCTCTGGAAGAGCGAATTGGAAATGTGAGTACTGGATTGAGTGAAGAAACCGTAATGAAACTTTTGAAACAGAAGAAGTATTCAGTTGAAACAGGATCTAAGCTTGAGGCAGAACCGTGCTGTGTCTGTCAGGAGGAGTATAACGACGGAGACGAGATTGGAATTCTTGATTGTGGGCATGACTTCCACAAAGACTGTGTCAAACAGTGGCTAATGCATAAGAATCTATGTCCCATTTGTAAGACAACAGGCTTGTCGTCGTGA 2151 0.4412 MQGQRGAIGSLPETLEFNCGSTSSNPTVDQPICWNNMRNPVDNDSDIPEYLLPLSNMNPPYMNPISHEWQNSSGWSLGGPSSSNTQSEINNNQQKRELGWTSPISANAAAGPRAEGRHFEPTIVLSSDNVNSSPMYMHSSNSHMSPNLNLNAELADSGDNSQHLEHPILHKSSGSVNERVLPGIVSGPIPHPPGNNSFVPEGTDARPGCSVDARRAPCKRKAIEENVGPSLDGGSSSSIQHTESSAWNTLPTQENAGSSLSRSASSEEVNARLGLGMGDEAPENLPHSNDAGSTESFRRNLRLRISPSSQQNSIPPPAFSSGSVIRHSSMSTSSMSQRFPPVDNPLDLRAAPMVDNIIPQSQPLVIHVPTLPRNMQSLRWNGSSSSSNSQSSSPLVCADRDNQPREESSSRSISRNIFDRPVFVPSTDLRNLVRNPTVRASGSANLSMSGNVASSSRAGSNSAINQSSTSAWVSRPNPPQYPRRLSEYVRRSLFSPPSETAGSQNPSNNYSSLRSGPTSSSEERVPSSGAGIQGHHQSQPRSLWMERQGDAEFGIPYSLRSLAAAGEGSSSRLVSELRNVLGLMRRGGGLRFEDVMIFDQSVFSGVADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVMKLLKQKKYSVETGSKLEAEPCCVCQEEYNDGDEIGILDCGHDFHKDCVKQWLMHKNLCPICKTTGLSS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01040 716 MobiDBLite consensus disorder prediction 305 340 - -
Accr3g01040 716 MobiDBLite consensus disorder prediction 441 483 - -
Accr3g01040 716 MobiDBLite consensus disorder prediction 441 476 - -
Accr3g01040 716 SMART ring_2 669 709 IPR001841 -
Accr3g01040 716 MobiDBLite consensus disorder prediction 495 541 - -
Accr3g01040 716 MobiDBLite consensus disorder prediction 305 344 - -
Accr3g01040 716 ProSiteProfiles Zinc finger RING-type profile. 669 710 IPR001841 -
Accr3g01040 716 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 214 715 IPR045191 GO:0061630
Accr3g01040 716 MobiDBLite consensus disorder prediction 377 413 - -
Accr3g01040 716 MobiDBLite consensus disorder prediction 72 101 - -
Accr3g01040 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 632 713 IPR013083 -
Accr3g01040 716 MobiDBLite consensus disorder prediction 377 398 - -
Accr3g01040 716 MobiDBLite consensus disorder prediction 276 295 - -
Accr3g01040 716 MobiDBLite consensus disorder prediction 188 269 - -
Accr3g01040 716 Pfam Ring finger domain 669 710 IPR001841 -
Accr3g01040 716 SUPERFAMILY RING/U-box 668 712 - -
Accr3g01040 716 FunFam E3 ubiquitin-protein ligase MBR2 637 714 - -
Accr3g01040 716 MobiDBLite consensus disorder prediction 230 268 - -
Accr3g01040 716 MobiDBLite consensus disorder prediction 496 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01040 Accr-Chr3 11777860 11781466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01040 218 716 C3H Transcription Factor Family AT2G15530 38.654 9.65e-86 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01040 - - gmx:100783014 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g01040 3 11777860 11781466 Accr4g01030 4 9785256 9788499 CCT
Accr3g01040 3 11777860 11781466 Accr3g01040 3 11777860 11781466 ECH