Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01029 ATGGAAGAAAGAGAGTGTTGTTCGAGGGATTCGACGATCACGACAAGCAGAAGCAGCCCGCCGGAGAAGCCGCGGAAGCAGCAGCACCAGAAAGCGGCAGCGAAGGACAAACCATACAGAGGGATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCTGAGATCAGAGAACCAAACAAGAGGTCAAGGATTTGGCTTGGTTCTTACACCACACCCATCGCCGCCGCACGCGCTTACGACACCGCCGTTTATTACCTCCGAGGCCCTTCTGCCTTCCTCAACTTCCCCGAACAGTTGTTCCAAGACGGCGGCGACGCCCTCACCCGCGGCGACTTGTCCGCCGATTCCATTCGTAAGAAAGCCACCGAAATCGGCGCAAGAGTTGACGCCCTCCAAACCGCCCTTCACGCCGCCTCCTCCTCTCCCTCCACCAGTTCTACCCAAACCACCTCCCAAAAACCAGACTTGAATGAATACCCGCAACCCGAAGAAGACTCCGTCGAGGATTAA 507 0.568 MEERECCSRDSTITTSRSSPPEKPRKQQHQKAAAKDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVYYLRGPSAFLNFPEQLFQDGGDALTRGDLSADSIRKKATEIGARVDALQTALHAASSSPSTSSTQTTSQKPDLNEYPQPEEDSVED 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01029 168 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Accr3g01029 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 21 164 - -
Accr3g01029 168 MobiDBLite consensus disorder prediction 134 156 - -
Accr3g01029 168 MobiDBLite consensus disorder prediction 22 38 - -
Accr3g01029 168 SUPERFAMILY DNA-binding domain 38 96 IPR016177 GO:0003677
Accr3g01029 168 MobiDBLite consensus disorder prediction 134 168 - -
Accr3g01029 168 Pfam AP2 domain 39 87 IPR001471 GO:0003700|GO:0006355
Accr3g01029 168 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Accr3g01029 168 MobiDBLite consensus disorder prediction 1 38 - -
Accr3g01029 168 FunFam Ethylene-responsive transcription factor 2 37 96 - -
Accr3g01029 168 CDD AP2 39 97 IPR001471 GO:0003700|GO:0006355
Accr3g01029 168 Gene3D AP2/ERF domain 38 97 IPR036955 GO:0003700|GO:0006355
Accr3g01029 168 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Accr3g01029 168 PRINTS Ethylene responsive element binding protein signature 77 97 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01029 Accr-Chr3 11577003 11577509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01029 37 168 AP2-EREBP Transcription Factor Family AT2G23340 56.164 1.43e-48 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr3g01029 AP2 1.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01029 K09286 - cpap:110818891 194.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g01029 3 11577003 11577509 Accr3g01029 3 11577003 11577509 ECH