Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01013 ATGGCTTCTTTGAAGAAAGACATCGACCGTATTAAAGGCCCGTGGAGCCCCGAAGAAGATGAAGCCTTGCAGAGACTCGTTCAGATTTACGGTCCCAGAAACTGGTCTCTAATCAGCAAGTCCATTCCCGGTCGATCCGGCAAGTCCTGCCGTTTGCGGTGGTGCAACCAGCTCTCTCCCAACGTCGAGCGCCGGCCTTTCACGCCCGAGGAGGACGAGACCATCATCAGAGCACACGCCAGGTTCGGCAACAAGTGGGCCACAATCGCTCGCTTGCTCCACGGTCGCACCGACAACGCCATCAAAAACCACTGGAATTCCACTCTCAAGAGGAAATGCTCCGCCATCACCGATCCTTTCAATCCCGAATCCGACGATCAACAGCCTCTTAAAAGATCTGCCAGCGTCGGCGCCGCCCCAACCGTCTCCGGATTGTACTTGAGCCCGAGTAGTCCATCCGGATCCGATTTGAGCGATACCAGTTTGCCCGCTATGTCTCCCACGCGGGTTTGCAGACCCTTCATTAGGAACGCCGCCCCAATCCCCTGCACCCAACAACCGGAAGATGCCAATTCGGCTCATGATCCACCGACATCACTATGCCTATCACTGCCTGGATCCGATTCGCACGAGGCCTCCAACCATGGATCCGGATCGAATCTGTCTGTCAGCCCGACCCAGTTACTGCCAAGTCCGCCATCGTCAGCGGCTGACCCACCAGCTGTAGGAGCATCAATACAGCAAGTGAGTATCCCAGCTCCTACCAGTCAGAGATGTGATCAGTTTGGGTGGGAGAAACAATTTTTTAGCGCCGAGTTTTTGGCGGTTATGCAAGAGATGATAAAGAAGGAAGTGAGGAATTACATGTCTGGGGTAGAGCCGAATGGTGTGTGTATTCAGACGGAAGCCATTAGAAACGCTGTGATGAAGAGCATCGGAATAGGCAGGGTCGAGTAA 957 0.5423 MASLKKDIDRIKGPWSPEEDEALQRLVQIYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPNVERRPFTPEEDETIIRAHARFGNKWATIARLLHGRTDNAIKNHWNSTLKRKCSAITDPFNPESDDQQPLKRSASVGAAPTVSGLYLSPSSPSGSDLSDTSLPAMSPTRVCRPFIRNAAPIPCTQQPEDANSAHDPPTSLCLSLPGSDSHEASNHGSGSNLSVSPTQLLPSPPSSAADPPAVGASIQQVSIPAPTSQRCDQFGWEKQFFSAEFLAVMQEMIKKEVRNYMSGVEPNGVCIQTEAIRNAVMKSIGIGRVE 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01013 318 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Accr3g01013 318 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Accr3g01013 318 FunFam Transcription factor MYB44 66 112 - -
Accr3g01013 318 MobiDBLite consensus disorder prediction 116 131 - -
Accr3g01013 318 Gene3D - 65 135 - -
Accr3g01013 318 FunFam MYB transcription factor 12 63 - -
Accr3g01013 318 MobiDBLite consensus disorder prediction 184 231 - -
Accr3g01013 318 Pfam Myb-like DNA-binding domain 15 73 - -
Accr3g01013 318 MobiDBLite consensus disorder prediction 144 162 - -
Accr3g01013 318 PANTHER MYB PROTEIN-RELATED 12 188 - -
Accr3g01013 318 CDD SANT 14 56 IPR001005 -
Accr3g01013 318 SMART sant 11 60 IPR001005 -
Accr3g01013 318 SMART sant 63 111 IPR001005 -
Accr3g01013 318 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Accr3g01013 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Accr3g01013 318 Gene3D - 11 63 - -
Accr3g01013 318 MobiDBLite consensus disorder prediction 116 137 - -
Accr3g01013 318 MobiDBLite consensus disorder prediction 143 162 - -
Accr3g01013 318 CDD SANT 66 109 IPR001005 -
Accr3g01013 318 MobiDBLite consensus disorder prediction 181 243 - -
Accr3g01013 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01013 Accr-Chr3 11383906 11384862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01013 9 318 MYB Transcription Factor Family AT5G67300 52.188 1.73e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr3g01013 Myb_DNA-bind_6 1.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01013 K09422 - qsa:O6P43_016026 417.927