Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00995 ATGGCTCTGGAAGCTCTCAAGTCACCCACCTCCGCTCCTCCCTCCTTCCCTTTCGAATTGGACTCCAATCTTCACTCCTTGGAGTCATGGACCAAGCGCAAGCGTTCCAAGCGATCCCGTCTAGACCAACCCTCGTCATGCACCTCCGAGGAAGAATATCTCGCTCTCTGCCTCATCATGCTTGCTCGCGGTGGCTCCGCCGTCTCCCCCACCAATCAAACCCCCTCCGACCGTCATAACTCCCCTTCTCCCGATAATTTTCCCCCTGCTGCATCTGAGTCGCGCCCGCTGTCCGGACTAGATCCAACCACCGCCCCCAAGCCCAGTTACAAATGCTCTGTTTGCGACAGGGCTTTCTCCTCTTACCAGGCTCTTGGAGGACACAAGGCCAGTCACAGAAAGCTCACCGCAGGCGCCGCTCCTGGCGAAGATCAATCCACCTCCTCCGCCGTCACGAGTACTTCTGCAAACACCGCTACAACTGCAGGGGGTAAGTCCCACGAGTGTTCTATCTGCCACAAGTCCTTCCCCACCGGACAAGCTCTTGGAGGTCACAAGCGCTGTCACTACGACGGCGGTGCTGCCGCTGCAGCTGCCGGTGGTAGCAGCGCTGTAACTGCTTCAGAAGGAGTTGGATCCACCCATACTGTCAGCCACAGCCACCGTGACTTCGACCTGAACCTTCCCGCTTTGCCCGACTTCTCTGCCAAATTCTTCACTCATGGCGAAGACGAAGTCGAGAGCCCTTTGCCGGTGAAGAGGCCGCGTCTTTTGATGGCACCGAAAACCGAAGAAGATCACTGA 804 0.5759 MALEALKSPTSAPPSFPFELDSNLHSLESWTKRKRSKRSRLDQPSSCTSEEEYLALCLIMLARGGSAVSPTNQTPSDRHNSPSPDNFPPAASESRPLSGLDPTTAPKPSYKCSVCDRAFSSYQALGGHKASHRKLTAGAAPGEDQSTSSAVTSTSANTATTAGGKSHECSICHKSFPTGQALGGHKRCHYDGGAAAAAAGGSSAVTASEGVGSTHTVSHSHRDFDLNLPALPDFSAKFFTHGEDEVESPLPVKRPRLLMAPKTEEDH 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00995 267 MobiDBLite consensus disorder prediction 66 105 - -
Accr3g00995 267 Gene3D Classic Zinc Finger 107 189 - -
Accr3g00995 267 MobiDBLite consensus disorder prediction 243 267 - -
Accr3g00995 267 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 132 IPR013087 -
Accr3g00995 267 Pfam C2H2-type zinc finger 110 134 - -
Accr3g00995 267 Pfam C2H2-type zinc finger 167 191 - -
Accr3g00995 267 MobiDBLite consensus disorder prediction 66 88 - -
Accr3g00995 267 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 32 232 IPR044653 GO:0003700
Accr3g00995 267 MobiDBLite consensus disorder prediction 30 49 - -
Accr3g00995 267 ProSiteProfiles Zinc finger C2H2 type domain profile. 167 189 IPR013087 -
Accr3g00995 267 MobiDBLite consensus disorder prediction 1 21 - -
Accr3g00995 267 SUPERFAMILY beta-beta-alpha zinc fingers 110 189 IPR036236 -
Accr3g00995 267 MobiDBLite consensus disorder prediction 133 167 - -
Accr3g00995 267 MobiDBLite consensus disorder prediction 141 165 - -
Accr3g00995 267 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Accr3g00995 267 SMART c2h2final6 167 189 IPR013087 -
Accr3g00995 267 SMART c2h2final6 110 132 IPR013087 -
Accr3g00995 267 ProSitePatterns Zinc finger C2H2 type domain signature. 169 189 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00995 Accr-Chr3 11146408 11147211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00995 1 257 C2H2 Transcription Factor Family AT1G27730 51.351 1.61e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr3g00995 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00995 - - pcin:129298535 404.831