Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00980 ATGTTGTGTGCTTGTTCCGGGGAGCAATTCAAATTCGAAGAGCCGCCACACTCGCCGGAGTCCCTTGCAACTAGAGATTTCTCGGCCAGTGGACTCTCTTCGAGGACTGGGGATTGGGAATCTAAATTTGATGACGCGCAAGTAGATGAAGCTGAATCTACTCTTAAAGAAGCTCTCTCCTTAAACTACGAGGAAGCTAGGGCTTTGTTGGGGAGGCTTGAATTCCAAAGAGGGAATTTCGATGCTGCCCTTCAAGTATTTCAGGGGATTGACATTAAGGGCCTCACTCCAAGGATGATTAGGTCCATTTCTGAGAGAACCAAGCAAAGAAAACCACGTTCTAAAACCCATCACGTGCTTCCCTCCATAATGTCAATGCATTCGGTAAGCCTGCTTCTTGAGGCTATTCTGCTCAAAGCGAAATCATTGGAGGCACTCGGACGCTACACTGAGGCTGCAAAGGAATGCAAAATAATTCTGGACACGGTTGATTCTGCACTACCAGCTGGAATGCCTCTAGGTTTTGGCGAGGATTGTAAACTGCAAGAGATGTTCCATCGAGCATTGGAGTTGCTTCCAGAACTTTGGACCTATGCAGGCTTACTAGATGAAGCTGTCACTGCATATCGGCGTGCTCTGATCAAGCCGTGGAATTTGGAGCCACAAAGGCTGGCTGCCATTCAGAAAGATTTAGCCGTCACACTCCTTTATGGTGGTGTTGAAATAACCCTTCCATCTCATTTGCATGTGTGGGGTGTAACAACGCCGAAGACTAACATTGAAGAATCTGTTCTGTTGTTACTAATACTCATGAGAATGATAGTACTTCAGGAAATCGAATGGGATTCAGAACTATTAGATCATCTTTCATTTGCACTTTCGATTACTGGGATGTTTGAGTCATTGGCAGATCATGTTGAGCAGATCCTTCCAGGTGTTTATAGTCGTGCTGAGAGGTGGTACTTTCTTGCCCTGTGTTATAGTGCTGCAGGACAGAATGAAACAGCACTGAACCTTCTGATGAAAGTTTGTGGTAGTTCTGAAGCAAAGCATATACCCCATTTCCCTTCCTTTTTATTGGGAGCAAAACTGTGTTCCCAAGATCCCAACCATGCCCATGAGGGCATTAAATTGTCACGGAAAGTGATTGATCTTGCCAAGCATCAATGTGAGCACTTTCAGGGTCAAGGTCACAGATTTCTTGGTGTTTGTTATGGGGCTGCGGCTAGAATTTCTGTACTGGATTCTGAAAGAGTTATATGTCAAAGAGAGTCTTTGAATTCTTTAAACCAAGCTGCTATAATTGGAAATTGGAACCCTGAAGTGATATTCAGCCTGGGATTGGAAAATGCAGTTCAAAGAAATCTGGTGGCAGCTTATGAGAACGCAGTGATGTACTCAGATATGATTGTTGGTAGCTCAGGAAAAGGTTGGCAACTGTTAGCACTCATAGTATCTGCACAGCACCGGTTCAAGGATGCTGAGACTGTAGTTGATTTTGCTTTAGACGAATCTGGAAGGACGGATCAGTTACAACTTTTAAGATTGAAAGCTGTGCTTCAAATAGCTCAGCAGCAACCTAAGCAAGCAATAGAGACCTACAGAATCTTGCTAGCGCTTATTCAAGCACGAAAGGAATTTTGGCTTGAATATGAGAACATCGATCCGGCAAACTCGTTGAGACAAGAGGAATTAACAGAAAAAAAAATGGAAATGGAAGCCTGGCAGGATCTGGCAACCATTTATGCCGATCTAGGTGCCTTGCTTGATGCAAAAACTTGTGTAGACAAAGCCCAGCTGATAGAATTCTTTTCTCCCAGAAGTTGGCACATTACAGGGAAATTGTTTGAAGCTAAATCGTTATACAAGGAGGCCATTGTTTCTTTCACAATTGCGTTGTCGATGGAACCAGATTATGTCCCCAGCATCATTTCAACTGCAGAATTGTTGTTGAAAGCTGGTACGCAAACACTTCCAATTGCAAGAAGCTTTTTAATGAACGCTCTACGGTTGGAACCCACAAACCATGATGCGTGGTTCAATCTTGGATTGATTTCAAAAATGGAAGGTTCATTGCAGCAAGCAGCAGATTTCTTCCAAGCTGCATATGAGCTAAAGCTTTCAGCTCCAGTTGAAAGATTTGTGGGAGTAATTGAGACTCCGAGATGA 2169 0.4366 MLCACSGEQFKFEEPPHSPESLATRDFSASGLSSRTGDWESKFDDAQVDEAESTLKEALSLNYEEARALLGRLEFQRGNFDAALQVFQGIDIKGLTPRMIRSISERTKQRKPRSKTHHVLPSIMSMHSVSLLLEAILLKAKSLEALGRYTEAAKECKIILDTVDSALPAGMPLGFGEDCKLQEMFHRALELLPELWTYAGLLDEAVTAYRRALIKPWNLEPQRLAAIQKDLAVTLLYGGVEITLPSHLHVWGVTTPKTNIEESVLLLLILMRMIVLQEIEWDSELLDHLSFALSITGMFESLADHVEQILPGVYSRAERWYFLALCYSAAGQNETALNLLMKVCGSSEAKHIPHFPSFLLGAKLCSQDPNHAHEGIKLSRKVIDLAKHQCEHFQGQGHRFLGVCYGAAARISVLDSERVICQRESLNSLNQAAIIGNWNPEVIFSLGLENAVQRNLVAAYENAVMYSDMIVGSSGKGWQLLALIVSAQHRFKDAETVVDFALDESGRTDQLQLLRLKAVLQIAQQQPKQAIETYRILLALIQARKEFWLEYENIDPANSLRQEELTEKKMEMEAWQDLATIYADLGALLDAKTCVDKAQLIEFFSPRSWHITGKLFEAKSLYKEAIVSFTIALSMEPDYVPSIISTAELLLKAGTQTLPIARSFLMNALRLEPTNHDAWFNLGLISKMEGSLQQAADFFQAAYELKLSAPVERFVGVIETPR 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00980 722 ProSiteProfiles TPR repeat profile. 606 639 IPR019734 GO:0005515
Accr3g00980 722 Gene3D Tetratricopeptide repeat domain 599 705 IPR011990 GO:0005515
Accr3g00980 722 Pfam Tetratricopeptide repeat 45 89 - -
Accr3g00980 722 MobiDBLite consensus disorder prediction 23 37 - -
Accr3g00980 722 SUPERFAMILY TPR-like 135 353 IPR011990 GO:0005515
Accr3g00980 722 SUPERFAMILY TPR-like 573 706 IPR011990 GO:0005515
Accr3g00980 722 SUPERFAMILY TPR-like 424 599 IPR011990 GO:0005515
Accr3g00980 722 ProSiteProfiles TPR repeat profile. 676 709 IPR019734 GO:0005515
Accr3g00980 722 Gene3D Tetratricopeptide repeat domain 273 598 IPR011990 GO:0005515
Accr3g00980 722 Gene3D Tetratricopeptide repeat domain 33 239 IPR011990 GO:0005515
Accr3g00980 722 SMART tpr_5 511 544 IPR019734 GO:0005515
Accr3g00980 722 SMART tpr_5 572 605 IPR019734 GO:0005515
Accr3g00980 722 SMART tpr_5 317 350 IPR019734 GO:0005515
Accr3g00980 722 SMART tpr_5 676 709 IPR019734 GO:0005515
Accr3g00980 722 SMART tpr_5 133 166 IPR019734 GO:0005515
Accr3g00980 722 SMART tpr_5 606 639 IPR019734 GO:0005515
Accr3g00980 722 MobiDBLite consensus disorder prediction 12 38 - -
Accr3g00980 722 PANTHER PROTEIN NPG1 1 714 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00980 Accr-Chr3 10989817 10992588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00980 1 715 Calmodulin-binding Proteins AT1G27460 59.388 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00980 K21843 - gmx:100780807 1113.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00980 3 10989817 10992588 Accr3g00980 3 10989817 10992588 ECH