Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00958 ATGGATTCTGATCAAGCCAAGCTGTTTGTGGGTGGCATTTCCCGGGACACTACTGAAGATGTTTTGAAACACCACTTCGCCAAGTACGGCTCTGTTTTGGGTTCCACAATTTCGTTGGACCGCAACACCAAAATTCCTAGGGGCTTTGGCTTCGTTAGGTTCTCCGACGTTTCAGCGGCTGATCAAGCCCTTCAAGACACGCATATCATACTCGGAAGAACGGTAGAAGTGAAGAAAGCAATACCTAGAAGTGAACATCAACATCCAAACCTACCCCAGAATAGAGGGACGAGTAACTGTGGTAGTTATGACAGTAGCAGCGACCACGTTAGCACCAAAAAGGTTTTTGTAGGAGGCCTATCAGCTGGTGTATCTGAGGTCGAGTTTAAGAAATATTTCGAGAGATTTGGTAGAATAACGGATGTAGTGGTGATGCAGGACAGTATAACTCACCGGCCTAGGGGGTTTGGTTTCATTACTTTTGATTCAGAAGAATCTGTTGAAAGTGTGATGATGAAAAGCTTCCATGACTTGAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTGCCAAAAGACGGGAACAATAATTATGATAGTGGTAATAGAATGAGATACAAGAATGGAAGAGGAGCCCCTAAAGGTCCCCCTCAGTATGGTCCTAGGTACATTCCCCCTGCGGTTGCACCTCTTCCCTGCTACGGCAGTGATGGATTGTACTTTTATGGATCTAACATGTATGGTTGCTGGTTCCCTATGGGAGGCTATGGTTGCAATGGATCTGCAGTTCCAATTGATGTTCCTAGGAATTTCTGGTATGGTCCTCCAGTGGCAACTGCTCAGACATGCCAGGTGCCTTATGCTTCACCAACCCACGCATATGGGACTGTTAGGGGTGTACTCGGTTCTGAAACTAGAGGCTACAATGGCATCATGGGATCTGCAGAAAATTTTAAATTCAACCAGGTTTTCAGTGCCAATGGATTTCTACCAGCTGATGTTACGTCGTCATCTCCCAAGGTTGAAGATTTGAAGCAGGAAATGGAGTCTCTAAGTTTGAAAGAAACCAAAGCTGAAGCTTCTAGCTAA 1086 0.4558 MDSDQAKLFVGGISRDTTEDVLKHHFAKYGSVLGSTISLDRNTKIPRGFGFVRFSDVSAADQALQDTHIILGRTVEVKKAIPRSEHQHPNLPQNRGTSNCGSYDSSSDHVSTKKVFVGGLSAGVSEVEFKKYFERFGRITDVVVMQDSITHRPRGFGFITFDSEESVESVMMKSFHDLNGRQVEVKRAVPKDGNNNYDSGNRMRYKNGRGAPKGPPQYGPRYIPPAVAPLPCYGSDGLYFYGSNMYGCWFPMGGYGCNGSAVPIDVPRNFWYGPPVATAQTCQVPYASPTHAYGTVRGVLGSETRGYNGIMGSAENFKFNQVFSANGFLPADVTSSSPKVEDLKQEMESLSLKETKAEASS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00958 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Accr3g00958 361 Gene3D - 93 220 IPR012677 -
Accr3g00958 361 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 313 - -
Accr3g00958 361 MobiDBLite consensus disorder prediction 190 216 - -
Accr3g00958 361 Gene3D - 1 90 IPR012677 -
Accr3g00958 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 173 IPR000504 GO:0003723
Accr3g00958 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Accr3g00958 361 SUPERFAMILY RNA-binding domain, RBD 105 214 IPR035979 GO:0003676
Accr3g00958 361 MobiDBLite consensus disorder prediction 334 361 - -
Accr3g00958 361 MobiDBLite consensus disorder prediction 82 105 - -
Accr3g00958 361 CDD RRM2_Hrp1p 114 191 - -
Accr3g00958 361 MobiDBLite consensus disorder prediction 339 361 - -
Accr3g00958 361 MobiDBLite consensus disorder prediction 87 105 - -
Accr3g00958 361 Coils Coil 340 360 - -
Accr3g00958 361 SUPERFAMILY RNA-binding domain, RBD 3 101 IPR035979 GO:0003676
Accr3g00958 361 SMART rrm1_1 114 186 IPR000504 GO:0003723
Accr3g00958 361 SMART rrm1_1 7 78 IPR000504 GO:0003723
Accr3g00958 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00958 Accr-Chr3 10753714 10755087 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00958 8 251 Eukaryotic Initiation Factors Gene Family AT2G36660 25.692 1.10e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00958 K14411 - gmx:100816822 446.432