Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Accr3g00958 | ATGGATTCTGATCAAGCCAAGCTGTTTGTGGGTGGCATTTCCCGGGACACTACTGAAGATGTTTTGAAACACCACTTCGCCAAGTACGGCTCTGTTTTGGGTTCCACAATTTCGTTGGACCGCAACACCAAAATTCCTAGGGGCTTTGGCTTCGTTAGGTTCTCCGACGTTTCAGCGGCTGATCAAGCCCTTCAAGACACGCATATCATACTCGGAAGAACGGTAGAAGTGAAGAAAGCAATACCTAGAAGTGAACATCAACATCCAAACCTACCCCAGAATAGAGGGACGAGTAACTGTGGTAGTTATGACAGTAGCAGCGACCACGTTAGCACCAAAAAGGTTTTTGTAGGAGGCCTATCAGCTGGTGTATCTGAGGTCGAGTTTAAGAAATATTTCGAGAGATTTGGTAGAATAACGGATGTAGTGGTGATGCAGGACAGTATAACTCACCGGCCTAGGGGGTTTGGTTTCATTACTTTTGATTCAGAAGAATCTGTTGAAAGTGTGATGATGAAAAGCTTCCATGACTTGAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTGCCAAAAGACGGGAACAATAATTATGATAGTGGTAATAGAATGAGATACAAGAATGGAAGAGGAGCCCCTAAAGGTCCCCCTCAGTATGGTCCTAGGTACATTCCCCCTGCGGTTGCACCTCTTCCCTGCTACGGCAGTGATGGATTGTACTTTTATGGATCTAACATGTATGGTTGCTGGTTCCCTATGGGAGGCTATGGTTGCAATGGATCTGCAGTTCCAATTGATGTTCCTAGGAATTTCTGGTATGGTCCTCCAGTGGCAACTGCTCAGACATGCCAGGTGCCTTATGCTTCACCAACCCACGCATATGGGACTGTTAGGGGTGTACTCGGTTCTGAAACTAGAGGCTACAATGGCATCATGGGATCTGCAGAAAATTTTAAATTCAACCAGGTTTTCAGTGCCAATGGATTTCTACCAGCTGATGTTACGTCGTCATCTCCCAAGGTTGAAGATTTGAAGCAGGAAATGGAGTCTCTAAGTTTGAAAGAAACCAAAGCTGAAGCTTCTAGCTAA | 1086 | 0.4558 | MDSDQAKLFVGGISRDTTEDVLKHHFAKYGSVLGSTISLDRNTKIPRGFGFVRFSDVSAADQALQDTHIILGRTVEVKKAIPRSEHQHPNLPQNRGTSNCGSYDSSSDHVSTKKVFVGGLSAGVSEVEFKKYFERFGRITDVVVMQDSITHRPRGFGFITFDSEESVESVMMKSFHDLNGRQVEVKRAVPKDGNNNYDSGNRMRYKNGRGAPKGPPQYGPRYIPPAVAPLPCYGSDGLYFYGSNMYGCWFPMGGYGCNGSAVPIDVPRNFWYGPPVATAQTCQVPYASPTHAYGTVRGVLGSETRGYNGIMGSAENFKFNQVFSANGFLPADVTSSSPKVEDLKQEMESLSLKETKAEASS | 361 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Accr3g00958 | 361 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 113 | 190 | IPR000504 | GO:0003723 | |
Accr3g00958 | 361 | Gene3D | - | 93 | 220 | IPR012677 | - | |
Accr3g00958 | 361 | PANTHER | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 | 1 | 313 | - | - | |
Accr3g00958 | 361 | MobiDBLite | consensus disorder prediction | 190 | 216 | - | - | |
Accr3g00958 | 361 | Gene3D | - | 1 | 90 | IPR012677 | - | |
Accr3g00958 | 361 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 115 | 173 | IPR000504 | GO:0003723 | |
Accr3g00958 | 361 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 75 | IPR000504 | GO:0003723 | |
Accr3g00958 | 361 | SUPERFAMILY | RNA-binding domain, RBD | 105 | 214 | IPR035979 | GO:0003676 | |
Accr3g00958 | 361 | MobiDBLite | consensus disorder prediction | 334 | 361 | - | - | |
Accr3g00958 | 361 | MobiDBLite | consensus disorder prediction | 82 | 105 | - | - | |
Accr3g00958 | 361 | CDD | RRM2_Hrp1p | 114 | 191 | - | - | |
Accr3g00958 | 361 | MobiDBLite | consensus disorder prediction | 339 | 361 | - | - | |
Accr3g00958 | 361 | MobiDBLite | consensus disorder prediction | 87 | 105 | - | - | |
Accr3g00958 | 361 | Coils | Coil | 340 | 360 | - | - | |
Accr3g00958 | 361 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 101 | IPR035979 | GO:0003676 | |
Accr3g00958 | 361 | SMART | rrm1_1 | 114 | 186 | IPR000504 | GO:0003723 | |
Accr3g00958 | 361 | SMART | rrm1_1 | 7 | 78 | IPR000504 | GO:0003723 | |
Accr3g00958 | 361 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 82 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Accr3g00958 | Accr-Chr3 | 10753714 | 10755087 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Accr3g00958 | 8 | 251 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 25.692 | 1.10e-15 | 76.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Accr3g00958 | K14411 | - | gmx:100816822 | 446.432 |