Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00942 ATGGTGATCGGAGAACTACCTTGTTTTGCCTCAAACTTCCGTTCGCAGTCGAACCTACCTGATAATCCAACCATCGCAATGCCCGTTGATGGTTTAGCTATCAACTTAAATGGCAATGCCGGTGATTGCGATTATCCACCTTCCATCGATTCCTCCACTGCTCTCCACCCTTTTCCTTCCAGCGATCTCACTCCCATTGATTTGGATTCGCTCTGCGAAGATTTCGACGCTTCTTTTGATGCTTTTTCCTGCGATCATTTCCGCATCTTCGAGTTTAAGATCCGCAAATGCGCGCGTTCCCGGTCACATGACTGGACGGAGTGTCCGTACGCCCATCCCGGCGAGAAGGCTCGCCGGAGAGACCCTAGGAAATTTCACTATTCCGGCACCGCATGCTCCGAGTTTCGCAAAGGTAACTGCAAGAAAGGTGACTCGTGCGAGTTTGCTCACGGAGTGTTTGAATGCTGGCTTCACCCATCTCGTTACAGAACCCAATCCTGCAAGGACGGAACAAATTGTCGCCGCCGAGTTTGCTTCTTCGCTCACACACCGGAACAATTGCGTTTCCTCGCTAACGGTTCTGGCGAATCATCGGAGGGGTCGCCGATTTGTCACGCCTCCTTCGTTTCATCGCCGACATCCGTACTCCAGCCGTCGCCGATCTCTTCATTGGTCGAATCCCCGCCCACATCGCCGGGAAACCCCCGACACGGCTGGAGTGAAATAAGCGCATCAATGTGTAAGGCTCAAAGCGATAAGCCGCCTTCAACTCGAGCTCCTCACTTGCGCAGTGCACTCGGCTCACCTCATGGTATCCATATGGGTCCGGTATTCGGTTCGCCCCGTGGTTCGAATCTCCGACCCGGATTTCTTAGCCTTCATTCGACGCCGACCCGGATGGTAATGAAATCTGGGCTTGGTAAGCTGGACATGTGGGATCAAAGCCACCAAGAGGAACCTGCCATGGAAAGGGTTGAATCTGGAAGAGAACTCAGAGCCAAAATGTACGCTAAGCTCTGTAAGGAGAATTCATTCGGGCGAAGCAACACAATTTTCGGAAATGTTCTGACATGA 1074 0.5223 MVIGELPCFASNFRSQSNLPDNPTIAMPVDGLAINLNGNAGDCDYPPSIDSSTALHPFPSSDLTPIDLDSLCEDFDASFDAFSCDHFRIFEFKIRKCARSRSHDWTECPYAHPGEKARRRDPRKFHYSGTACSEFRKGNCKKGDSCEFAHGVFECWLHPSRYRTQSCKDGTNCRRRVCFFAHTPEQLRFLANGSGESSEGSPICHASFVSSPTSVLQPSPISSLVESPPTSPGNPRHGWSEISASMCKAQSDKPPSTRAPHLRSALGSPHGIHMGPVFGSPRGSNLRPGFLSLHSTPTRMVMKSGLGKLDMWDQSHQEEPAMERVESGRELRAKMYAKLCKENSFGRSNTIFGNVLT 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00942 357 SMART c3hfinal6 126 152 IPR000571 GO:0046872
Accr3g00942 357 SMART c3hfinal6 161 184 IPR000571 GO:0046872
Accr3g00942 357 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 131 151 IPR000571 GO:0046872
Accr3g00942 357 ProSiteProfiles Zinc finger C3H1-type profile. 127 153 IPR000571 GO:0046872
Accr3g00942 357 FunFam Zinc finger CCCH domain-containing protein 66 84 152 - -
Accr3g00942 357 Gene3D - 122 193 - -
Accr3g00942 357 PANTHER UNKEMPT FAMILY MEMBER 73 349 IPR045234 -
Accr3g00942 357 MobiDBLite consensus disorder prediction 218 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00942 Accr-Chr3 10484591 10485664 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00942 76 240 C2H2 Transcription Factor Family AT5G12850 53.333 1.42e-54 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr3g00942 zf-CCCH 7.5e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00942 - - cave:132185767 390.193