Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00941 ATGTCAGACGCCCACCAACTGCAATCTCTCATCCCAAGAGTCACTCCTCCGAGTATTGTCTCTCCAAAAATGGTGATCGGAGAACTACCTTGTTTTGCCTCAAACTTCCGTTCGCAGTCGAACCTACCTGATAATCCAACCATCGCAATGCCCGTTGATGGTTTAGCTATCAACTTAAATGGCAATGCCGGTGATTGCGATTATCCACCTTCCATCGATTCCTCCACTGCTCTCCACCCTTTTCCTTCCAGCGATCTCACTCCCATTGATTTGGATTCGCTCTGCGAAGATTTCGACGCTTCTTTTGATGCTTTTTCCTGCGATCATTTCCGCATCTTCGAGTTTAAGATCCGCAAATGCGCGCGTTCCCGGTCACATGACTGGACGGAGTGTCCGTACGCCCATCCCGGCGAGAAGGCTCGCCGGAGAGACCCTAGGAAATTTCACTATTCCGGCACCGCATGCTCCGAGTTTCGCAAAGGTAACTGCAAGAAAGGTGACTCGTGCGAGTTTGCTCACGGAGTGTTTGAATGCTGGCTTCACCCATCTCGTTACAGAACCCAATCCTGCAAGGACGGAACAAATTGTCGCCGCCGAGTTTGCTTCTTCGCTCACACACCGGAACAATTGCGTTTCCTCGCTAACGGTTCTGGCGAATCATCGGAGGGGTCGCCGATTTGTCACGCCTCCTTCGTTTCATCGCCGACATCCGTACTCCAGCCGTCGCCGATCTCTTCATTGGTCGAATCCCCGCCCACATCGCCGGGAAACCCCCGACACGGCTGGAGTGAAATAAGCGCATCAATGTGTAAGGCTCAAAGCGATAAGCCGCCTTCAACTCGAGCTCCTCACTTGCGCAGTGCACTCGGCTCACCTCATGGTATCCATATGGGTCCGGTATTCGGTTCGCCCCGTGGTTCGAATCTCCGACCCGGATTTCTTAGCCTTCATTCGACGCCGACCCGGATGGTAATGAAATCTGGGCTTGGTAAGCTGGACATGTGGGATCAAAGCCACCAAGAGGAACCTGCCATGGAAAGGGTTGAATCTGGAAGAGAACTCAGAGCCAAAATGTACGCTAAGCTCTGTAAGGAGAATTCATTCGGGCGAAGCAACACAATTTTCGGAAATGTTCTGACATGA 1143 0.5206 MSDAHQLQSLIPRVTPPSIVSPKMVIGELPCFASNFRSQSNLPDNPTIAMPVDGLAINLNGNAGDCDYPPSIDSSTALHPFPSSDLTPIDLDSLCEDFDASFDAFSCDHFRIFEFKIRKCARSRSHDWTECPYAHPGEKARRRDPRKFHYSGTACSEFRKGNCKKGDSCEFAHGVFECWLHPSRYRTQSCKDGTNCRRRVCFFAHTPEQLRFLANGSGESSEGSPICHASFVSSPTSVLQPSPISSLVESPPTSPGNPRHGWSEISASMCKAQSDKPPSTRAPHLRSALGSPHGIHMGPVFGSPRGSNLRPGFLSLHSTPTRMVMKSGLGKLDMWDQSHQEEPAMERVESGRELRAKMYAKLCKENSFGRSNTIFGNVLT 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00941 380 PANTHER UNKEMPT FAMILY MEMBER 95 372 IPR045234 -
Accr3g00941 380 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 154 174 IPR000571 GO:0046872
Accr3g00941 380 MobiDBLite consensus disorder prediction 241 263 - -
Accr3g00941 380 Gene3D - 146 216 - -
Accr3g00941 380 SMART c3hfinal6 184 207 IPR000571 GO:0046872
Accr3g00941 380 SMART c3hfinal6 149 175 IPR000571 GO:0046872
Accr3g00941 380 FunFam Zinc finger CCCH domain-containing protein 66 107 175 - -
Accr3g00941 380 ProSiteProfiles Zinc finger C3H1-type profile. 150 176 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00941 Accr-Chr3 10484591 10485733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00941 99 263 C2H2 Transcription Factor Family AT5G12850 53.333 1.89e-54 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr3g00941 zf-CCCH 8.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00941 - - cave:132185767 390.193