Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00940 ATGGGAAGAGCTCCTTGCTGTGACAAAAACAGCGTTAAGAGAGGCCCTTGGTCTCCTGAAGAAGACGATACTCTCAGGACTTATGTTCAAACTCATGGCACTGGTGGTAATTGGATCGCATTGCCCCGTAAAGCAGGCCTTCGGAGGTGTGGCAAGAGTTGCCGTCTACGGTGGCTGAATTATCTCAGGCCAGACATCAAACATGGAGGCTTTACTGAAGAAGAAGACATCATCATTTTGAGCCTTTACGGCCAAATGGGAAGCAGATGGTCGGCCATAGCCTCTCGGCTTCCTGGTAGAACAGACAATGATGTGAAGAACTACTGGAACACCAAGTTAAAGAAGAAGCTAATGTCTGGAAAAGTGAACCTCAAAACAGTGTCCGACGACACTCACACTACTACCACTCTTCCTTCGACCACATCATCACTAACTTATAATGTTCAAACCCAAAACCAAAATCCAGATTTTGCTCCTTCCCAAATGAACCACACTTCATCTTCCTCACCAACTCAGCAAATTCCGACCGACGCTAATTCTGGGGGGTTTCACCACCACATCAACACTCACAACACCATGATCAGTTTTAACCCGTCTCAATTATACAGTCCAGGGTTCATGGATGTCTCAGAAATCAACGCAAGCTCAAACATGATCTCGCCCTTGTCTCAGGAAGGTTCAAGCATTTCGGACTCATCTTTGATGGCAACAGAGAACAAATTATGTGTGTCGCTGCCGGATCATGCTGGGGACGAAGCAACCCAGGAAATGTTGATGAATTTTGGGTTTGGTGGTTATTATCACTCTGACCTTGTCAATAATGGAATTTACTCCCATGGGAAAATTGGTGAGTTCCCTTCAAGTTTCTATCCTCATGAGTTGGTTGATTTTGGCTATAATGCCGACATGAAGCCACAAGGACGAAATTAA 930 0.4527 MGRAPCCDKNSVKRGPWSPEEDDTLRTYVQTHGTGGNWIALPRKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDIIILSLYGQMGSRWSAIASRLPGRTDNDVKNYWNTKLKKKLMSGKVNLKTVSDDTHTTTTLPSTTSSLTYNVQTQNQNPDFAPSQMNHTSSSSPTQQIPTDANSGGFHHHINTHNTMISFNPSQLYSPGFMDVSEINASSNMISPLSQEGSSISDSSLMATENKLCVSLPDHAGDEATQEMLMNFGFGGYYHSDLVNNGIYSHGKIGEFPSSFYPHELVDFGYNADMKPQGRN 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00940 309 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Accr3g00940 309 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Accr3g00940 309 Gene3D - 70 137 - -
Accr3g00940 309 CDD SANT 71 113 IPR001005 -
Accr3g00940 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Accr3g00940 309 MobiDBLite consensus disorder prediction 150 177 - -
Accr3g00940 309 PANTHER OS09G0431300 PROTEIN 1 226 - -
Accr3g00940 309 Gene3D - 6 68 - -
Accr3g00940 309 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Accr3g00940 309 MobiDBLite consensus disorder prediction 1 21 - -
Accr3g00940 309 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Accr3g00940 309 CDD SANT 16 62 IPR001005 -
Accr3g00940 309 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Accr3g00940 309 FunFam Transcription factor RAX3 7 68 - -
Accr3g00940 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Accr3g00940 309 SMART sant 67 115 IPR001005 -
Accr3g00940 309 SMART sant 13 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00940 Accr-Chr3 10474742 10476229 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00940 1 203 MYB Transcription Factor Family AT5G57620 50.427 1.00e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr3g00940 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00940 K09422 - qsa:O6P43_019065 328.946