Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00928 ATGGAGAATGATATGCTTGGTGCTCCAATGGACGTGGCTGCTGGCCGAAATTCCTCTGTCTTAGATGAAATTTCACAAACAGAAAATCCACTTTTTCAGGGCTATTCATCTTACCAAACACGCATCATGAATGGAATCTCAACGCTTGCTGGAATGCAAGGTGAACTCATAAGTAATGTCCATTTCGATGTTCCTCCAATGAATCCTCCCTGCGTTGCCGATCCTAGTTCCTTGGTTCCATCTCAAGTAAAGAACAATTTAGGAGATGCCCCCCTCGGAACCCCATGTCCCCGAAACAATAGTGTGTTTCAAGATCAACAAGCAGGAGCCAGTAAAATCACTCCTGCTTCACTTTCTGTCATTTCTGCTGCAAGATTTGGTCTTCAAGAAAACTTAGAGAAATCATCAGCTTTGTCTCCTTCACTCTGTTCATTGGAGGCTCTGGCACCTTATATATTAAGCAATTGGCAGGATAGTTCAAACACCCTGCTTCCAACTTTTGGAGATCGTGTGTTTGATGAAGTACCTGGTACTAGGTTCTTGGCTTATTCGTCCACATCAAGCTTGGATCCAAATGGAGGGACATCTTCAAATGCTGCAGACTTGACCTATCATGGTTATGATTACCCGAATTTCAGGAATAAGCTTTCATTAAGTATAGCACCATCTCCCACCACAGGTCAGTACTCGGAGGTGAGCTCTGATAGCTTGGAACAAGCCTCCTGTAGCAGTAGGGGAGTTTCTGGAAGTTTGGGTTCCAATGGACATTTCAATTTTTCACAAGCAATATTGGGGTCCAGATATCTTACTGGGATTCAAGAAATACTTGCTCAAATTGCAAGGTATTCACTTGAAAATACAGAACAGGTTAATTGTTCAGCTGCTAGGAGTAGAGACAGAGCAGAAGGGAATATATCACCCTCAGTTCTTCCATCCGCGAGAATGATAGAGACAACAAATCACAATGCAGATTCTATGTTTGAAGCTCAAGTGAATTCTTCATCTGCTACACATGATGCTTCTGAATCAAAGAAATCCCAGCTTCTGTCACTTTTACAACTGGTGGACAGTCGATATAATCAGTGTTTGGATGAGATACATACTGTTGTATCCGCATTTCATGCTGCTACAGAGTTGGACCCGCAAGTTCATGCACATTTTGCCCTTAAGGCAATCTCTATGCTGTACAAAGATTTGCGTGAGAGGATAAGCAATTATATCCTTTCCATGGGAGAAATATTTAACAACTCGCGCTCAGAAGAAGATAAAGAAAGGTCTACGGAAGCCTTATTCATCGAAAAACAGTGGGCTCTGCAGCAATTCAAGAGGAAAGAGCATCAGTTATGGAGGCCCCAAAGGGGCTTGCCAGAACGATCTGTCTCTGTTCTTCGGGCTTGGATGTTTCAGAATTTCCTCCATCCGTATCCAAAAGATGCAGAGAAGCAAGTACTTGCAGTAAAAAGTGGATTGACTAGAAGCCAGGTATCAAACTGGTTCACTAATGCTCGTGTAAGGCTGTGGAAACCTTTGATTGAGGAAATGTACGCTGAAATGAACAGAAGAAAGGCTCTTAGGAATGAAGAAGGCACGCAGAGCAGCCACAGATTCAGCGGGGTACGCTTGAGCAATCAAAGATTTGCTATCAATTCATAA 1653 0.4289 MENDMLGAPMDVAAGRNSSVLDEISQTENPLFQGYSSYQTRIMNGISTLAGMQGELISNVHFDVPPMNPPCVADPSSLVPSQVKNNLGDAPLGTPCPRNNSVFQDQQAGASKITPASLSVISAARFGLQENLEKSSALSPSLCSLEALAPYILSNWQDSSNTLLPTFGDRVFDEVPGTRFLAYSSTSSLDPNGGTSSNAADLTYHGYDYPNFRNKLSLSIAPSPTTGQYSEVSSDSLEQASCSSRGVSGSLGSNGHFNFSQAILGSRYLTGIQEILAQIARYSLENTEQVNCSAARSRDRAEGNISPSVLPSARMIETTNHNADSMFEAQVNSSSATHDASESKKSQLLSLLQLVDSRYNQCLDEIHTVVSAFHAATELDPQVHAHFALKAISMLYKDLRERISNYILSMGEIFNNSRSEEDKERSTEALFIEKQWALQQFKRKEHQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKQVLAVKSGLTRSQVSNWFTNARVRLWKPLIEEMYAEMNRRKALRNEEGTQSSHRFSGVRLSNQRFAINS 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00928 550 SMART prehox3 257 405 IPR006563 -
Accr3g00928 550 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 195 528 - -
Accr3g00928 550 CDD homeodomain 449 509 IPR001356 GO:0003677
Accr3g00928 550 Pfam Homeobox KN domain 466 505 IPR008422 GO:0003677|GO:0006355
Accr3g00928 550 ProSiteProfiles 'Homeobox' domain profile. 446 509 IPR001356 GO:0003677
Accr3g00928 550 SMART HOX_1 449 513 IPR001356 GO:0003677
Accr3g00928 550 SUPERFAMILY Homeodomain-like 451 518 IPR009057 -
Accr3g00928 550 Gene3D - 452 531 - -
Accr3g00928 550 Pfam Associated with HOX 263 404 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00928 Accr-Chr3 10356357 10358295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00928 203 522 Homeobox Transcription Factor Family AT4G32980 51.515 3.92e-103 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Accr3g00928 POX 2.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00928 - - gmx:100812648 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00928 3 10356357 10358295 Accr3g00928 3 10356357 10358295 ECH