Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00920 ATGACTCCTGTTGCTATGAAGCCTCCAAACCCTTTCCTTCTCACGGATCAAATAGAAGATCAACACCAACTCCTCGTTTCTCCTCTTAATCAGGATTCTTCATCTAATTCTTCTCTCTCATCACATCCTACTTTCTTCCATTTACTTGATCAAACTCAGTCTGCTAGAGAAACCCGCAGAGAGTTAGGGCATGATCAAGAGGAAGATGAACTGGTGTTTCATGGTGGATCAAGCAGTCATCACCAAGTTTGTAATTCATCCTTCAATTCATCCCACCAGAATCAACAAGTTAAGGATGATCGAAGAAACGTGTGTGGCGGATATAAAGTAGAGGAGGAGGTAGAAAGCCATAAAAGCAGTTACGAGACTGTACAATGGATGCCTTCAAAGATGAGGTTGATGAAGAAGATGATGATCCCCAATAATACTAGTCCTGTACCTCACAAAGGATCAAATATCACGCTAAATATCCAAACTCGAGAGCACCACAAAACCCAAACCCAAAAGAGTCCTTCCAATAACCACAGAAATAGCACCACCACTAGGGTTTGCGCCGACTGTAACACAACCAGTACCCCACTTTGGAGGGGTGGCCCAAAGGGTCCTAAGTCACTGTGCAATGCGTGTGGGATTAGGCAGAGAAAGGCGAGAAGGGCATTAATGGCGGAAGCTGGAAATGGTGCAGTGAGTTGCAGATTGCATAGCAAGGAGAAGAAGGCTCGCAAGAACCATTTTGTAGCATTAAAGAATAATAATAAGTGCAAGGCCACTATTGCAAGCCATAGTGAAGGAACATTATCTGAGGGAGAAAGGAACAAGAAGAAGAATATTGGGTTTGAGGATTTGGCATTTAGTTTCAGGAACAACGTGTCGGCGGTTGAGCAAGTGTTTCCTCCGGCCGATGAAGTTGCTCAAGCGGCGTTGCTTCTCATGGATCTATCTTATGCCTCCGTTCCTATTTAA 963 0.4413 MTPVAMKPPNPFLLTDQIEDQHQLLVSPLNQDSSSNSSLSSHPTFFHLLDQTQSARETRRELGHDQEEDELVFHGGSSSHHQVCNSSFNSSHQNQQVKDDRRNVCGGYKVEEEVESHKSSYETVQWMPSKMRLMKKMMIPNNTSPVPHKGSNITLNIQTREHHKTQTQKSPSNNHRNSTTTRVCADCNTTSTPLWRGGPKGPKSLCNACGIRQRKARRALMAEAGNGAVSCRLHSKEKKARKNHFVALKNNNKCKATIASHSEGTLSEGERNKKKNIGFEDLAFSFRNNVSAVEQVFPPADEVAQAALLLMDLSYASVPI 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00920 320 ProSiteProfiles GATA-type zinc finger domain profile. 178 214 IPR000679 GO:0006355|GO:0043565
Accr3g00920 320 Gene3D - 177 223 IPR013088 GO:0006355|GO:0008270
Accr3g00920 320 MobiDBLite consensus disorder prediction 161 180 - -
Accr3g00920 320 CDD ZnF_GATA 183 215 IPR000679 GO:0006355|GO:0043565
Accr3g00920 320 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 10 316 - -
Accr3g00920 320 SMART GATA_3 178 230 IPR000679 GO:0006355|GO:0043565
Accr3g00920 320 Pfam GATA zinc finger 184 217 IPR000679 GO:0006355|GO:0043565
Accr3g00920 320 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 178 223 - -
Accr3g00920 320 ProSitePatterns GATA-type zinc finger domain. 184 209 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00920 Accr-Chr3 10265475 10267196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00920 123 318 C2C2-Gata Transcription Factor Family AT4G26150 38.991 1.25e-23 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Accr3g00920 GATA 7.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00920 - - pcin:129298038 417.542