Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00888 ATGGACGGAGGTGCTCCCTATAATCCTCGCACGGTCGAGGAAGTCTTCAGGGATTTCAAGGGTCGCCGGGCTGGCATGATTAAGGCCCTCACCACCGATGTTGAAGAGTTTTATCAGCAGTGTGATCCTGAGAAAGAGAACCTTTGCCTTTATGGATTTCCTAGTGAACAGTGGGAAGTCAATCTACCAGCCGAGGAGGTGCCTCCAGAGCTTCCAGAACCTGCACTTGGTATCAACTTTGCCAGAGATGGAATGCAAGAAAAAGACTGGCTATCTTTGGTTGCTGTTCACAGTGATGCATGGCTACTTGCTGTAGCCTTTTATTTTGGTGCAAGATTTGGATTTGATAAGGCTGATAGGAAGCGATTGTTTAATATGATAAATGATCTTCCAACAATATTTGAGATTGTAACGGGGATGGCCAAGAAACAAGGAAAGGAGAAGTCATCAGTTTCTAACCATAGCAGTAACAAATCCAAATCAAACTCGAAGCAAACGCAGAGAGGATCTGAATCTCAAGGAAAGTATTTAAAAGCAATGCAATCAAAAGATGAAGATGAGGAGGGTTTGGATGAAGAAGACGAGGAGGAGCATGGAGAGACACTATGTGGGGCATGTGGAGAGAACTATGCAGCTGACGAGTTCTGGATTTGCTGTGACATTTGTGAAAAGTGGTTTCATGGGAAGTGTGTGAAGATCACCCCTGCAAGGGCTGAACATATCAAGCAGTACAAATGTCCTTCCTGCAGCAACAAGAGAGCTCGACCTTGA 771 0.4501 MDGGAPYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEIVTGMAKKQGKEKSSVSNHSSNKSKSNSKQTQRGSESQGKYLKAMQSKDEDEEGLDEEDEEEHGETLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00888 256 SUPERFAMILY FYVE/PHD zinc finger 192 253 IPR011011 -
Accr3g00888 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 251 IPR013083 -
Accr3g00888 256 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Accr3g00888 256 ProSiteProfiles Zinc finger PHD-type profile. 200 252 IPR019787 -
Accr3g00888 256 ProSitePatterns Zinc finger PHD-type signature. 203 249 IPR019786 -
Accr3g00888 256 MobiDBLite consensus disorder prediction 145 196 - -
Accr3g00888 256 MobiDBLite consensus disorder prediction 150 177 - -
Accr3g00888 256 FunFam PHD finger alfin-like protein 195 251 - -
Accr3g00888 256 CDD PHD_AL_plant 202 252 IPR044104 -
Accr3g00888 256 PANTHER CPG BINDING PROTEIN 8 255 IPR045104 GO:0006355|GO:0042393
Accr3g00888 256 SMART PHD_3 202 250 IPR001965 -
Accr3g00888 256 Pfam PHD-finger 203 252 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00888 Accr-Chr3 9930144 9933684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00888 1 255 Alfin-like Transcription Factor Family AT3G42790 77.344 3.82e-128 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Accr3g00888 Alfin 7e-70 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00888 K26274 - mnt:21387296 462.225