Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00887 ATGGGAGATCCCTGGTCTATTGTTCCGTACAATGATTACCTTTACGATTTCCCATTTCCCGATGACTTCGTCTATTTCCAGAATGATCCTATTCCACCCGCGGATCCACAACCATGCAATGAGCACAAACCTTCATTGTTTCCACAACAACCCAGTGATCCCATTTTTCAGAGATATGTTCCGGATTTGTGTCAAGAGATTCAAGACACCCCCATGGGCGATCTTCCCCATCGAGATTGCAACTTTGAAGCGGGTCATCAAGTGATTCAGGATACCCCAATGTGCCATATTCCCCATCAAGAGTGCAACTTCGAAGCGGGCCCATCTCATGTTCACGGGCAAGGCCATATTCCGAGTCAGGAGATTGTGTACAGACAACAGGATTTCCCCGATGTGGCTCAACTTCCAAACTCGCCCCAAAACCCACTCCCTTTTCTTTGTAGTTGTTGTCAAATTCTTAGAGAAATCATTCACACTAATGGGATTCAGTTAGCGAAACTGGAGATTCACGGAAGAGTGGGTGAAATCTGTCATGGGATTCTACGACAGAATATAAATGCGGGTTCCACCGGCGGTCACCAAAGTCACTTGCTTGATTTTAGCAAAATAAGTATGGAGGAGATCAAGAATTATATAAGGCAGTATTGCGCGGAGAAAAGTGCAGCAGGCTACTACACTCTGTTAGATCCACTGTCAGCTTATTATGAAGCCCTCTGCATTGGAATGGAATGGAATGAGGAGTTAAACGACGACTTCCTCGACACTGATAATTATTCTGGGGTTGCATTTGACGAGGCTGATGATCCGGATAGGACTAGTAGGGCTAGTCTTTCAGCGCAGAGGGAGAGAGCAGGGAAGATGAAACTGAGTGATTTCAGCGATGTGTTTCATCTACCAATTGAAGAAGCAGCCAGGCTAGTGAACTTGTGTCCTACAGTTGTAAAGAAGATATGCCGTAAAGAGGGATTACCCAGATGGCCTCACAGAAAGTTAAAGAGTATAATGAAGAAAGTCGACATATTGAGAGGGATTTTAAACTCACCAGGTCAGGAGGCTGTGGCAAGGGCTCGAGCGGTGGCAGAACTTGAGAGACTTCATCGAGAAATCATTCAACACTGTGGTGGACTCATGCCCACTTCATTAAATTTCAATGCTTGA 1158 0.4534 MGDPWSIVPYNDYLYDFPFPDDFVYFQNDPIPPADPQPCNEHKPSLFPQQPSDPIFQRYVPDLCQEIQDTPMGDLPHRDCNFEAGHQVIQDTPMCHIPHQECNFEAGPSHVHGQGHIPSQEIVYRQQDFPDVAQLPNSPQNPLPFLCSCCQILREIIHTNGIQLAKLEIHGRVGEICHGILRQNINAGSTGGHQSHLLDFSKISMEEIKNYIRQYCAEKSAAGYYTLLDPLSAYYEALCIGMEWNEELNDDFLDTDNYSGVAFDEADDPDRTSRASLSAQRERAGKMKLSDFSDVFHLPIEEAARLVNLCPTVVKKICRKEGLPRWPHRKLKSIMKKVDILRGILNSPGQEAVARARAVAELERLHREIIQHCGGLMPTSLNFNA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00887 385 PANTHER PROTEIN RKD4 130 369 IPR044607 GO:0003700
Accr3g00887 385 ProSiteProfiles RWP-RK domain profile. 274 354 IPR003035 -
Accr3g00887 385 Pfam RWP-RK domain 287 334 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00887 Accr-Chr3 9927617 9929307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00887 296 376 AtRKD Transcription Factor Family AT5G66990 36.585 5.92e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Accr3g00887 RWP-RK 3.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00887 - - pcin:129302128 403.675