Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00883 ATGGGTTGGGGTCACCTGGGAAGAACTGGGCAATCCAACTCGGGTGAGCCGAGTACCAGTGCGGAGGCTGCTCCGACCAACACTGAACAATCCGTACCTCGGCGATTCCCTCCGGCGGCACAGCCTGAGATCATGAGAGCGGCTGAAAAGGATGATCAGTATGCCTCTTTCGTCTATGAAGCCTGTCGCGATGCCTTCCGTCACCTCTTTGGTACTAGAGTTGCAGTTACCTACCAAAGTGAGACAAAACTATTGGGACAGATGCTTTACTATGTGCTGACAACAGGTTCAGGACAACAGACGCTTGGAGAGGAATACTGTGATATCACTCAGGTTGGAGGACCTTATGGACTTCCTCCTACTCCTGCAAGGCGTGCTCTTTTCATTGTATACCAGACAGCTGTTCCATATATTGCAGAAAGAATAAGTTCTAGAATTGCTTCCCGAGGAATTGCACTTGCTGATTCACAATCTGCTGAGATCTATGGTGAAAGTGGTACCATTAGGAGTAGTGAACTTCAAACTTCTGATGGGAGTGAACTTCCCTCTTCTTCATCAGGGCAATCTCTTACAATTCTGACAAGGTTGAAGGAGAAATTGAGAGGATCTTGGTTGCATGTAGTTCAGAGATGGCCTACGATGCTCCCTATGGTTCGTGAGTTGTTACAACTGGTTCTTCGTGCTAATCTTATGTTCTTCTATTTTGAAGGTCTCTTTTATCATATATCAAAACGTGCTGCAGGAATTCGATATGTCTTCATTGGAAAATCATCAAATCAAAGGCCCAGATACCAAATTCTTGGTGTATTTCTATTGATTCAGCTTTGTATAATTGCTGCTGAAGGGTTACGTCGAAGCAATTTGTCTTCAATTGCAAGTTCAGTTCATCAGACATCCTTTGGGACGCATCAGAGATCAGCAGGACGAGGTTTGCCTGTTTTAAATGAAGAGGGTCTTCCAGCATCGTCAGATACAGACAAAGGAAATTGGTTATCTGATGCCACGCATTCTGAGTCCCAAGCAACTGGTGGAGCGAGCAAATGCACTCTCTGCCTGAGTAATCGGCAACACCCAACAGCTACTTCCTGTGGCCATGTATTTTGCTGGAACTGTATAACCGAATGGTGCAACGAAAAGCCAGAATGCCCTCTTTGTCGCACCCCCTTAACACACTCAAGTCTTGTGTGCCTGTATCATTCAGACTTCTAG 1209 0.4574 MGWGHLGRTGQSNSGEPSTSAEAAPTNTEQSVPRRFPPAAQPEIMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVTYQSETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVGGPYGLPPTPARRALFIVYQTAVPYIAERISSRIASRGIALADSQSAEIYGESGTIRSSELQTSDGSELPSSSSGQSLTILTRLKEKLRGSWLHVVQRWPTMLPMVRELLQLVLRANLMFFYFEGLFYHISKRAAGIRYVFIGKSSNQRPRYQILGVFLLIQLCIIAAEGLRRSNLSSIASSVHQTSFGTHQRSAGRGLPVLNEEGLPASSDTDKGNWLSDATHSESQATGGASKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPLTHSSLVCLYHSDF 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00883 402 MobiDBLite consensus disorder prediction 320 342 - -
Accr3g00883 402 ProSitePatterns Zinc finger RING-type signature. 363 372 IPR017907 -
Accr3g00883 402 Pfam Pex2 / Pex12 amino terminal region 51 285 IPR006845 -
Accr3g00883 402 SUPERFAMILY RING/U-box 347 391 - -
Accr3g00883 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 399 IPR013083 -
Accr3g00883 402 MobiDBLite consensus disorder prediction 7 34 - -
Accr3g00883 402 MobiDBLite consensus disorder prediction 325 342 - -
Accr3g00883 402 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 37 400 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Accr3g00883 402 MobiDBLite consensus disorder prediction 1 36 - -
Accr3g00883 402 SMART ring_2 348 385 IPR001841 -
Accr3g00883 402 Pfam Zinc finger, C3HC4 type (RING finger) 346 390 - -
Accr3g00883 402 CDD RING-HC_PEX10 346 397 - -
Accr3g00883 402 ProSiteProfiles Zinc finger RING-type profile. 348 386 IPR001841 -
Accr3g00883 402 FunFam Peroxisome biogenesis factor 10 323 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00883 Accr-Chr3 9845847 9849584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00883 342 398 C3H Transcription Factor Family AT4G28270 32.877 1.68e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00883 K13346 - qsa:O6P43_015847 645.195