Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00879 ATGGGGAGGAGTCCATGTTGCTCCAAGGGAGTGAACAGAGGAGCCTGGACTGCCCTTGAGGACGAGTTACTGATCTCTTATGTTCAAGCCCATGGCGAAGGTAAATGGCGAAACGTCCCCCACCGAGCTGGCCTGAAAAGATGTGGCAAAAGCTGCAGGCTTCGCTGGCTGAACTATCTCAGGCCTAACATTAAGCGAGGCGACATCACTCACGATGAAGAAGATCTCATTATCAGGCTCCATAAACTTCTCGGTAACAGGTGGGCTCTTATAGCTGGAAGGCTTCCTGGGAGAACAGACAATGAAATCAAGAACTACTGGAACACTACCCTGGCCAAGAAGCACCGACACTTGGAATCAACAACAGGCAAGCAAGTGGCTGATGATCCTCAGCCACAACCACGGTTAATTCAAACCAAGCGCAGTCGGTGTAAGAATCTAGTTATCCTACCGCCGCGACACCCAGATGAAAACTCCAACATCAAGTCTTGTGCTTCAAACCAGATAGAGGTTGATGCCGCTCCGACAGCCACAAATCAATCTGTGCAGGGTTCACGTTCTCCGAAAACTCAACTTAAAGCAGACGAAGAGGGGGTTCATGAAAATCATTATTCGGATGTGAACATGTGGGGTTCTGGGAGAGAGGATCAGTTTGGCCTGAGTGCAGAAAATTTGTACGGAGAAGCCGGGAACTTTAACCTCGACCAGCCCCTACCCGTTGACGAATTTATGGTCAACGGTTGGGTCCCGGCAACAAGTGGCTTCGATGTCCCCAACAATAATGTAGCTATGGATTTGGAATCACTGTCCCTCCTGCTGCTCGACTATGGGAATTGGCCCTGA 843 0.4994 MGRSPCCSKGVNRGAWTALEDELLISYVQAHGEGKWRNVPHRAGLKRCGKSCRLRWLNYLRPNIKRGDITHDEEDLIIRLHKLLGNRWALIAGRLPGRTDNEIKNYWNTTLAKKHRHLESTTGKQVADDPQPQPRLIQTKRSRCKNLVILPPRHPDENSNIKSCASNQIEVDAAPTATNQSVQGSRSPKTQLKADEEGVHENHYSDVNMWGSGREDQFGLSAENLYGEAGNFNLDQPLPVDEFMVNGWVPATSGFDVPNNNVAMDLESLSLLLLDYGNWP 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00879 280 CDD SANT 70 111 IPR001005 -
Accr3g00879 280 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Accr3g00879 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Accr3g00879 280 MobiDBLite consensus disorder prediction 117 136 - -
Accr3g00879 280 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Accr3g00879 280 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Accr3g00879 280 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Accr3g00879 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Accr3g00879 280 CDD SANT 15 60 IPR001005 -
Accr3g00879 280 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Accr3g00879 280 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 191 - -
Accr3g00879 280 Gene3D - 13 65 - -
Accr3g00879 280 MobiDBLite consensus disorder prediction 175 189 - -
Accr3g00879 280 MobiDBLite consensus disorder prediction 175 196 - -
Accr3g00879 280 Gene3D - 70 141 - -
Accr3g00879 280 SMART sant 65 113 IPR001005 -
Accr3g00879 280 SMART sant 12 62 IPR001005 -
Accr3g00879 280 FunFam MYB-related transcription factor 12 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00879 Accr-Chr3 9774281 9775466 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00879 1 134 MYB Transcription Factor Family AT4G38620 58.621 6.34e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr3g00879 Myb_DNA-binding 9.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00879 K09422 - mof:131152242 236.113