Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00877 ATGGGGAGGACTCCTTCACGCAGTAATAATAATGAAGCGCAGAAAAGGGAGGCTTGGACTGCTCATGAAGACAAAATTCTGGCCTCGTATATCAGGTCCCATGGCGAAGGCAAATGGCAAAACATCCCCAAACGAACTGGTCTCAGGAGATGTGGCAAATCTTGTAGGCTTCGCTGGATGAATTACCTTAGGCCTGACATCAAAAGAGGCAACATTACTGAAGACGAGGAAGACCTCATTCTCAGGCTCCACAACCTGCTGGGCAACAGATGGTCACTCATAGCAGGCAGACTTCCAGGGCGAACAGACAATGAAATCAAAAACTACTGGAACTCCAACTTAGCCAAGAGGCGACCAAAGGATACATCTCAAAATGAGAAAAGGGAAATTGCAGAATCAAGAGTGTCCCATGAGGCTACGGAGTCGCCGAGCACTCAAGTGGCCTTAGCCACGTCAACTCCGATGGAACCCAGGACTGAGTATTGTGGCGATTCTGATGTTGCTACAGGGGAATTTGTTGCTTTTGATGGTCAATCGGCGTCAGCCGAAGAAAACGTCGATGGGGCTTTGATCGATTTTGATTTCAAGGATGTGGACTTTTTGGAGTTTCTGGACTTTGATTTTTCCGGACCTGCAGATTTTGACATGTTGATGAACATGGACGATCCCAAACAAGAAGGAAGGCAGAGTACTGGTTCTCAGTCATTTTCATTTTCTCCGGAAACAAACGCTGCGCGGGGGAATCAGAATTTCACCCATTACTGTTAG 768 0.4714 MGRTPSRSNNNEAQKREAWTAHEDKILASYIRSHGEGKWQNIPKRTGLRRCGKSCRLRWMNYLRPDIKRGNITEDEEDLILRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNSNLAKRRPKDTSQNEKREIAESRVSHEATESPSTQVALATSTPMEPRTEYCGDSDVATGEFVAFDGQSASAEENVDGALIDFDFKDVDFLEFLDFDFSGPADFDMLMNMDDPKQEGRQSTGSQSFSFSPETNAARGNQNFTHYC 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00877 255 MobiDBLite consensus disorder prediction 119 136 - -
Accr3g00877 255 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 150 - -
Accr3g00877 255 MobiDBLite consensus disorder prediction 116 158 - -
Accr3g00877 255 Gene3D - 7 68 - -
Accr3g00877 255 CDD SANT 73 114 IPR001005 -
Accr3g00877 255 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Accr3g00877 255 MobiDBLite consensus disorder prediction 137 153 - -
Accr3g00877 255 SMART sant 15 65 IPR001005 -
Accr3g00877 255 SMART sant 68 116 IPR001005 -
Accr3g00877 255 MobiDBLite consensus disorder prediction 224 255 - -
Accr3g00877 255 MobiDBLite consensus disorder prediction 221 255 - -
Accr3g00877 255 CDD SANT 18 63 IPR001005 -
Accr3g00877 255 FunFam MYB-related transcription factor 15 68 - -
Accr3g00877 255 SUPERFAMILY Homeodomain-like 15 110 IPR009057 -
Accr3g00877 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Accr3g00877 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Accr3g00877 255 Gene3D - 73 143 - -
Accr3g00877 255 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Accr3g00877 255 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Accr3g00877 255 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00877 Accr-Chr3 9733216 9734164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00877 13 225 MYB Transcription Factor Family AT3G13540 46.119 5.59e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr3g00877 Myb_DNA-binding 6.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00877 K09422 - egr:104436344 212.231