Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00852 ATGAAGAAGAAGAAGGGCGCCAAAGTTGCAGACGCCCTGGTCTTCTATTGTGCTGTGATCACTCTGTGTTTGAGGCTGAGCGTTTCACAAAGCAACACAACTACGGCGCCGGTGAAGGTGGGAGTTGTACTTGATCTTTCCCACACAACAGCTAAAATCGGACTCAGCTGCATCAACATGTCCCTCTCTGACTTTTATGCCTCTCATTCTCATTACAACACCAGGCTTCTCCTCCACATCACTGACTCCCACTCACACGTCATCACTGCTGCCTCTCAAGCTATAGATCTCATAAAAGTAGAACAAGTGCAAGCCATAATCGGACCCTTTACGTCAATGGAAGCTAACTTTGTAATCAGCCTCGGAGACAGAGCTCATGTACCCATTGTGACATTTTCGGCAACAAGTCCTTCTCTTGCTTCCCTTCGAAGTCCATATTTCTTTCGAGCTGCACAAAACGATTCAGCTCAAGTGAACGCCATTGGAGCAATCGTCCAAGCTTTCGGGTGGAAAAACGTGGTGCCCATTTACACAGGCAACGATTACGGGAAAGGGATCATATCCTTTTTGACTAATGCTCTTCAACAAGTGTACGTTCAAATCCCATATCAGAGTTCTATTTCAGCTTCAGCCACCGATGAAGATATCAAAGCAGAGCTCTACAAGTTAATGACCATGCAAACCAGAGTGTTCGTTGTGCACATGACACCTAATCCAGGCGAGCGACTCTTTAGAATAGCATATGAGATTGGTATGATGAACTTCGGCTATGTTTGGATTGTCACCGATGGTTTGGGCAGTGAGGTGAATTCATTAGGATCCTCAGTGATAGATTCGATGCAAGGAGTACTTGGTGTGAGGACCTATGTTCCAAAAACAGAACGGCTTGACGATTTTAAAGTTCGATGGAGAAGAAAATTCGTAAAAGACAATCCTACCCTTGTTCATACAGATTTGAATGTTTTTGGAAATTGGGCTTATGATGCTGCCACAGCATTAGCTATGGCTGTTGAGAAGGCCGGCGCCAAGAATCTCGGATTTGATACGAGCAATAATGCTTCTGGTAATTTTTCTAATCTTTTAAAGTTGGGAGTTTCAGAGAATGGGGAAAATCTGAGTAAGGCATTATCAGAGACTAGATTTCGTGGCATGAGTGGAGAGTTCAGTGTTATTAAGGGGGAATTGCAAGCATCCACATTTGAGATAATCAACGTTAATGGTAAAGGGGAGAGACAGGTCGGATTTTGGACACCAGAAAAAGGAATAACAAGGGATCTGAATTTCACAAGCACAAGCACTACATATTCTAGTTCTAGGAATAATTTGAAGCCTATCATATGGCCAGGAGATACAACCTCTGTTCCAAAGGGTTGGGATAATCCTACAAATGAGAAAAAGACCATGAGGATAGGAGTTCCTGTGAAAAAGGGTTTTACTGAATTTGTGAATGTAAGACATGATCGGAGCACCAATACAACAGATATCACTGGATTCTGCATAGACGTATTTAAGGCAGTGCTCGAAGTTTTGCCTTACGCTGTCCCTTACGAATTTATCCCATTTGAGAAACCCGATGGAGAACCAGCAGGGACATACGATGAGCTGATCGACCAAGTTTCTTATGGGAATTTGGATGCTGTTGTTGGAGATACGACGATTACAGCAAAGAGGTCGAATGAGGTGGACTTCACTATGCCATACACAGAATCTGGTGGGACTATGATTGTTTTGTTAGTAGAAAATAGGCACAAGAGTCCATGGAATTTCTTGAAGCCATTGACGTGGGATCTGTGGGTGACCACAGCTTTTTTGTTTATATTTGTTGCCTTCGTCGTGTGGGTGCTTGAACATCGAATAAACGGGGAGAAAGTGGTGAGCAACTGTGCTAGATTTGTGGTGATAACGTGGGTCTTCGTGGTACTAATTCTGATCCAAAGCTACACGGCAAGCTTGACTTCACTCTTGACCGTTCAAAAGCTGCGTCCAAGTGTTACAGATGTGAATGAATTGATAAAAAATAAGCTGAATGTGGGGTACAACAATGGTTCTTTTGTGTATGGTATATTAAAGGAAATGGGATTTCAAGATTCGCAACTCATTCCTTATGATTCCCCAGAACACTGTGACGAACTGTTTACACAAGGAAGTGCCAAGGGTGGCATTGACGCTGCTTTTGACGAAATGCCCGATGTGAAGATCTTTCTTGCAACTCATTGCTCCAAATATGCTTCCACAGCTCCACCTACCATTAGAACTGATGGCTATGGTTATGTGTTCCCTAAAGGGTCTCCTCTAGTGGCAGACATATCAAGGGGAATCCTGAATGTGACTCAGGGAGATAAAATGAAAACGATAGAGAACGCTTGGTTCAAGGGAAGTCAGTGTGCAGGGAACGATGCCTCAGTTTCTTCTGATAATCTAAGCGTTGATAGTTTCTGGGGACTCTTCTTCATAGCAGGGCTTGCCTCAGTTTCAGCTCTCTTCATATTTCTGGTCAGATTCCTACGTCAGCATAAGCATATCTGGCTAACCCATAATCCATCTGACACATCATCATCATCATCATCGTTACGGAAACGAATCAGTGCGTTGCTTAAGGTGTTTGACGACAAAGACCTGAGCTCCCACACATACAGAAAAAGTGAAAGTAAAAGTCCTGTTCATGGATCATCATCAGGTGCAACTGAGTTCTCTCCAAGTCCAAGTACTCACTTCCCACCAAGTCCGTCGACTCAGACGGCATCAAATTTACCTCAAGACATAGAGATCAGCATGGTGCATAGTTTCCCACCTTCATCCTCCTCTGCTGTAACTAGTCCTTCAAACAACTGA 2832 0.4357 MKKKKGAKVADALVFYCAVITLCLRLSVSQSNTTTAPVKVGVVLDLSHTTAKIGLSCINMSLSDFYASHSHYNTRLLLHITDSHSHVITAASQAIDLIKVEQVQAIIGPFTSMEANFVISLGDRAHVPIVTFSATSPSLASLRSPYFFRAAQNDSAQVNAIGAIVQAFGWKNVVPIYTGNDYGKGIISFLTNALQQVYVQIPYQSSISASATDEDIKAELYKLMTMQTRVFVVHMTPNPGERLFRIAYEIGMMNFGYVWIVTDGLGSEVNSLGSSVIDSMQGVLGVRTYVPKTERLDDFKVRWRRKFVKDNPTLVHTDLNVFGNWAYDAATALAMAVEKAGAKNLGFDTSNNASGNFSNLLKLGVSENGENLSKALSETRFRGMSGEFSVIKGELQASTFEIINVNGKGERQVGFWTPEKGITRDLNFTSTSTTYSSSRNNLKPIIWPGDTTSVPKGWDNPTNEKKTMRIGVPVKKGFTEFVNVRHDRSTNTTDITGFCIDVFKAVLEVLPYAVPYEFIPFEKPDGEPAGTYDELIDQVSYGNLDAVVGDTTITAKRSNEVDFTMPYTESGGTMIVLLVENRHKSPWNFLKPLTWDLWVTTAFLFIFVAFVVWVLEHRINGEKVVSNCARFVVITWVFVVLILIQSYTASLTSLLTVQKLRPSVTDVNELIKNKLNVGYNNGSFVYGILKEMGFQDSQLIPYDSPEHCDELFTQGSAKGGIDAAFDEMPDVKIFLATHCSKYASTAPPTIRTDGYGYVFPKGSPLVADISRGILNVTQGDKMKTIENAWFKGSQCAGNDASVSSDNLSVDSFWGLFFIAGLASVSALFIFLVRFLRQHKHIWLTHNPSDTSSSSSSLRKRISALLKVFDDKDLSSHTYRKSESKSPVHGSSSGATEFSPSPSTHFPPSPSTQTASNLPQDIEISMVHSFPPSSSSAVTSPSNN 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00852 943 Gene3D - 620 688 - -
Accr3g00852 943 CDD PBP1_GABAb_receptor_plant 39 426 IPR044440 -
Accr3g00852 943 Gene3D - 66 159 - -
Accr3g00852 943 Pfam Ligand-gated ion channel 792 822 IPR001320 GO:0015276|GO:0016020
Accr3g00852 943 SUPERFAMILY Periplasmic binding protein-like I 36 449 IPR028082 -
Accr3g00852 943 PIRSF IGluLR_plant 621 933 IPR017103 -
Accr3g00852 943 PIRSF IGluLR_plant 8 624 IPR017103 -
Accr3g00852 943 Gene3D - 713 797 - -
Accr3g00852 943 FunFam Glutamate receptor 157 317 - -
Accr3g00852 943 Gene3D - 467 588 - -
Accr3g00852 943 Pfam Receptor family ligand binding region 57 407 IPR001828 -
Accr3g00852 943 CDD GluR_Plant 466 790 - -
Accr3g00852 943 Pfam Bacterial extracellular solute-binding proteins, family 3 492 791 IPR001638 -
Accr3g00852 943 Gene3D - 160 325 - -
Accr3g00852 943 SMART GluR_14 469 792 IPR001320 GO:0015276|GO:0016020
Accr3g00852 943 SUPERFAMILY Periplasmic binding protein-like II 445 793 - -
Accr3g00852 943 MobiDBLite consensus disorder prediction 884 943 - -
Accr3g00852 943 MobiDBLite consensus disorder prediction 878 943 - -
Accr3g00852 943 FunFam Glutamate receptor 467 586 - -
Accr3g00852 943 Gene3D - 351 466 - -
Accr3g00852 943 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 38 857 IPR015683 -
Accr3g00852 943 FunFam Glutamate receptor 365 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00852 Accr-Chr3 9428534 9437312 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00852 13 909 Ion Channels AT2G29120 48.927 0.0 827